© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0351900.1
CCTATTTTTCTTTTTATTTCCCTATATGGATAGAGCGCATGCGCAAGATGAATCATAACTTCTTTTCCTGTACTCAGCAGTGTAGCAATGCTAGTCAATAAAGCTAATTTCACCTTTGAACGGGAATGGGGAAGCAATGGAGTAGAGAATTACAGGAGAAGGTGGCAGCTGAGGAGAGAATCAGGAGCTGTCACAAAGCTATATACAAGTTGGGAAGCTGAACGAGAAGAGAGCATATGCTTCCCTCCTACAGGAAGCATTATGACTTGTTGGTGCTGTTTTACAAATCTGGGTGATTATCGGAAGATCGTCATGCGGTAGCAGCTGCAGCTTCTTCTGCGACTTGGGATCCCTGTTGCAGAGTGCAGATGAGGTTGCGATCCCCGTACACATTGTCCACGCGACATGTTGTTGGCCAGAACTTGGCGCCCCGAAGCCACGCTGCAGGGAACGCAGCATACTCCCTGGAGTACGGCTTAGTCCATGAGTCGCTCATCAGAAGTTGGGGCGGGTGAGGAGCACTCTTGAGGACGTTGTTGTTCACATCTGCTTTGCCACTTTCTATCTCTGCAATTTCTTCCCTGATTGAGATTAGAGCATCACAGAACCTATCTAGTTCGGCCTTGCTTTCACTTTCAGTTGGTTCAATCATAAGTGTGCCTGGAACAGGCCATGACATAGTAGGTGCATGGAATCCATAGTCCATCAAACGCTTTGCAACATCCTCTGGCTCTATACCAGCAGTCGTCTTAAATCCTCTTAAATCAATAATGAACTCATGGGCAACAGTTCCATTGACTCCACGGAAAAGAACTGGGTAGTGTTTCTCCAGACGCTTTGTCATGTAGTTTGCATTCAAGATTGCAATCTTTGAAGCATCAGTGAGACCCTTAGAACCCATCATGGCTATGTATGTGTAGGAAATTGGTAGAATCAACGCTGATCCCCATGGGGCAGCAGAAATGGTACCAAGAGGGTCGGTTTTCTCAGGGAGAGGGAAGCCACCGGTGGTGATCACTGGATGAGATGGTAAAAATGGTGCTAAGTGCTTCTTAACACCAATAGGACCCATTCCAGGACCACCCCCACCATGTGGAATGCAGAATGTCTTGTGAAGGTTAAGGTGGCAAACATCTGCTCCAATAAAGCCAGGGCTTGTCAATCCGACCTGAGCATTCATGTTAGCTCCATCCATGTAGACCTGCCCACCGTTCTCATGAATTATCATGCATATCTCATCAATGCCTTCTTCATAGACTCCATGGGTCGAAGGATAGGTAACCATAAGAGCAGCCAAGTTGTCCTTGTTTGCTTCAGCAGCTTTCCTCAACTCCTCGATGTTAATGTTACCTTTGGAATCAGTTCCAACAGCAACAATCTTCATTCCACACATAGCAGCACTTGCAGGATTTGTACCATGGGCTGACACAGGAATGATACAGACATCCCGGTGGTAGTCTCCTCTTGCCCTGTGGTAAGCACGGATAACCATCAATCCGGCATACTCCCCTGAAGCACCAGCATTTGGTTGCAAAGAGAAAGAATCAAAGCCAGTGATCTTGCACAGCAGATCGCCCAAGTCATCAAACATTTCATGATATCCTGCGGCTTGGTCAGTAGGTGCAAATGGGTGCATGTTTGCAAAGTTGGGGTAGGTGACAGGCATCATCTCCACTGTAGCATTTAGTTTCATAGTGCAAGAACCAAGAGGGATCATACTGTGGCACAGTGAAAGGTCCTTGGATTGCAACTTGTACAGGTAGCGGAGAAGCTCATGCTCTGTATGGTACATGTTAAAGATCGGGTGGGTTAAGTAGGGGCTCTTGCGCACAAGGCTACTCGGAATTGAGCTTGAGACCTCTGGTGCGAGGGATTCAGCAGTGAAGTTCACTGGCTTGCCACCATTGAACACCTTGAACAGCTTGTCGACATCCTCCAAGGTTGTGGTCTCATCAAAGGCAACGGTTATCGTGGTTGCATCAACGACACGAAGGTTCATCTCGTTCTTGCAGGCCTCCTGGGCAATCGCATTCGCGTCAGCGACCTTGACCTTGACAGTGTCGAAGAAGGGCAGCTCCTGCACCGTCACTGTTCCGAGCTTCTTCAATCCTTGGGCAAATGTACCAGCCAGTCCATGTACACGGTCGGCAATTGCCTTTAGCCCCTCGGGACCATGGTAGACAGCATACATCGCTGCCATGTTGGCGAGCAAGGCCTGGGCAGTGCAGATGTTGCTGGTGGCCTTGTCGCGGCGGATGTGCTGCTCCCGGGTCTGCATCGCCATCCGGAGCGCGGGCTTGCCGCTGGAATCGACGCTGACGCCGATGATGCGGCCGGGCATGAGGCGCTTGTACTCCTGGGACGTGGCGAGGAACGCGGCGTGCGGGCCGCCGTACCCCATGGGCACGCCGAACCGCTGCGCGGAGCCGACGGCGATGTCGGCACCGATCTCGCCGGGCGGGCGCAGCGAGGTGAGCGCGAGCAGGTCGGTGGCCATGACCACCTTGACGCCGTGCGCGTGCGCGTCCCTGACGAACTCCGCGTAGTCCAGCACCTCCCCCTCCGTGCCGGGGTACTGCACGAGCACCCCGCACACGTCGCCGCTGCCGTAGTCGAAGTCCTTGGCGTCCGCGACGACGACGTTGAGGTCGAACCCGGCGGCGCGCGTCTGGCACACGTCGATGGTCTGCGGGTGGCAGTTGGAGGCGATGAGGAAGGTCTTCTTCTTGGACTTGAGGATGCCGTTGCACATGGCCATGGCCTCGGCGGCGGCGGTGGCCTCGTCGAGCAGCGAGGCGTTGGACATGGGGAGGCCGGTGAGGTCGGCGACCATGGTCTGGTAGTTGAGCAGCGACTCGAGGCGACCCTGCGCGATCTCCGCCTGGTACGGCGTGTACTGCGTGTACCACGCCGGGTTCTCCATGAGGTTGCGCAGGATCACCGCGGGGACGTGGGTGTTGTAGTACCCCATCCCGATGAAGGACTTGTAGGCCCTGTTCATGGCGGCGAGGCGCTGCATGTGCTCGATCATCTCGGACTCGGTGAACCCGGCGTCGAACCTCCCGGAGAAGCGCATCTCCGGCGCGCGGATGGCGGCCGGGACGGTGGCGTCGATGAGCGCGTCGACGGTGCCGAACCCGCACTCCGACGCCATCGCCGCCTGCTCCGCCGGCGTCGCCGAGTTGTGCCGCCGCGGGAACGTGTCGCTCGGCTGCAGCGCCGACGCCGACACGGGCCGCCGCCCCGTGGTGTACTGGTGGGGCGCCGGGCGTGGGGGGGCGCGCGGGCGCGACCCCTTGGCCAGGGTCGAGATGCCGCGGGACGGGGCCGCCGGGGACTCCGCCGTCGCCGCCGCGAGGAGGCGGCGCAGCAGCGCGCGGTTGGCGAGGCGGCGTGCGCGCTCCATCCTGAGATTGGAGGACGAGGGTTTAGGTGAGGGCCTCCTCCACTCTCCTGCCGATAAGAGCGGCTGTGTGGTTTGGGTGCTCCACTGCCTTTTCTACCGGCAGCGGCTGGCCTCCTCGTCCATGCAAACGCCATCCGCTTCCTCCGCCTCCCGTTGCTGATCACTGTGTCAGCGCCCACGTCATCTCCCGTGCTCTCCACCTCACTCCACAATAAC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0351900.1 | 6 | 24402703 | G | A |
| Osa06LNT0351900.1 | 6 | 24403444 | C | T |
| Osa06LNT0351900.1 | 6 | 24404701 | C | T |
| Osa06LNT0351900.1 | 6 | 24405570 | A | G |
| Osa06LNT0351900.1 | 6 | 24405580 | A | G |
| Osa06LNT0351900.1 | 6 | 24405603 | A | G |
| Osa06LNT0351900.1 | 6 | 24401229 | G | A |
| Osa06LNT0351900.1 | 6 | 24402403 | G | A |
| Osa06LNT0351900.1 | 6 | 24402726 | T | C |
| Osa06LNT0351900.1 | 6 | 24402755 | A | G |
| Osa06LNT0351900.1 | 6 | 24402838 | A | G |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa06LNT0351900.1 | DTM_#DNAt_MULE_japo_Os0067 | Chr6 | - | 24402723 | 24402876 | 153 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0351900.1 | osa-miR5795 | Cleavage | 4.0 | 22.74 | 1 | 22 |
| Osa06LNT0351900.1 | osa-miR169a | Cleavage | 4.0 | 16.307 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395b | Cleavage | 3.5 | 19.06 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395b | Cleavage | 5.0 | 15.437 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395d | Cleavage | 3.5 | 19.06 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395d | Cleavage | 5.0 | 15.437 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395e | Cleavage | 3.5 | 19.06 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395e | Cleavage | 5.0 | 15.437 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395g | Cleavage | 3.5 | 19.06 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395g | Cleavage | 5.0 | 15.437 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395h | Cleavage | 3.5 | 19.06 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395h | Cleavage | 5.0 | 15.437 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395i | Cleavage | 3.5 | 19.06 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395i | Cleavage | 5.0 | 15.437 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395j | Cleavage | 3.5 | 19.06 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395j | Cleavage | 5.0 | 15.437 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395k | Cleavage | 3.5 | 19.06 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395k | Cleavage | 5.0 | 15.437 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395l | Cleavage | 3.5 | 19.06 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395l | Cleavage | 5.0 | 15.437 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395s | Cleavage | 3.5 | 19.06 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395s | Cleavage | 5.0 | 15.437 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395t | Cleavage | 3.0 | 19.06 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395c | Cleavage | 3.0 | 19.06 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395c | Cleavage | 5.0 | 15.437 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395u | Cleavage | 4.0 | 19.06 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395u | Cleavage | 4.5 | 15.437 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR168b | Translation | 4.5 | 16.616 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR169b | Cleavage | 4.0 | 16.307 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR169c | Cleavage | 4.0 | 16.307 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR169e | Cleavage | 4.5 | 16.307 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR169f.1 | Cleavage | 4.5 | 16.307 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR169g | Cleavage | 4.5 | 16.307 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR169h | Cleavage | 4.5 | 16.307 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR169i-5p.1 | Cleavage | 4.5 | 16.307 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR169j | Cleavage | 4.5 | 16.307 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR169k | Cleavage | 4.5 | 16.307 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR169l | Cleavage | 4.5 | 16.307 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR169m | Cleavage | 4.5 | 16.307 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395m | Cleavage | 3.5 | 19.06 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395m | Cleavage | 5.0 | 15.437 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395n | Cleavage | 3.5 | 19.06 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395n | Cleavage | 5.0 | 15.437 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395o | Cleavage | 2.5 | 19.06 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395p | Cleavage | 3.5 | 19.06 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395p | Cleavage | 5.0 | 15.437 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395q | Cleavage | 3.5 | 19.06 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395q | Cleavage | 5.0 | 15.437 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395w | Cleavage | 3.5 | 15.437 | 1 | 22 |
| Osa06LNT0351900.1 | osa-miR395w | Cleavage | 4.0 | 17.165 | 1 | 22 |
| Osa06LNT0351900.1 | osa-miR395r | Cleavage | 3.5 | 19.06 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395r | Cleavage | 5.0 | 15.437 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR169r-5p | Cleavage | 5.0 | 16.307 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR1877 | Cleavage | 4.5 | 11.315 | 1 | 24 |
| Osa06LNT0351900.1 | osa-miR2863a | Cleavage | 5.0 | 13.041 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395x | Cleavage | 4.0 | 19.06 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395y | Cleavage | 3.5 | 19.06 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR395y | Cleavage | 5.0 | 15.437 | 1 | 21 |
| Osa06LNT0351900.1 | osa-miR5077 | Cleavage | 4.5 | 24.696 | 1 | 19 |
| Osa06LNT0351900.1 | osa-miR5077 | Cleavage | 5.0 | 16.867 | 1 | 19 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0351900.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0351900.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0351900.1 | 6 | qDLR6-2 | Resistance or Tolerance | Other soil stress tolerance | RM1340 | RM5957 |
| Osa06LNT0351900.1 | 6 | tgw6.1 | Physiological trait | Source activity | RG264 | RM3 |
| Osa06LNT0351900.1 | 6 | nan | Morphological trait | Root | RM4447 | RM5509 |
| Osa06LNT0351900.1 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Osa06LNT0351900.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0351900.1 | 6 | prt6.1 | Resistance or Tolerance | Drought tolerance | R2549 | RG716 |
| Osa06LNT0351900.1 | 6 | gw6 | Morphological trait | Panicle/flower | RG424 | R2549 |
| Osa06LNT0351900.1 | 6 | nan | Physiological trait | Eating quality | RM253 | RM162 |
| Osa06LNT0351900.1 | 6 | qGL-6 | Morphological trait | Seed | R674 | R2549 |
| Osa06LNT0351900.1 | 6 | RPLD4 | Physiological trait | Eating quality | RG424 | RG172 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)