>Osa06LNT0352700.2

TACGTCCGAGGAGCAGCGTGCAGTGAAAACGACATTGGCCCACAGCACACAGACACCTGGTAAAAAAGAGGCAACGTAAATACTTGCGGGAACGAACACGCCAGGTATCGCATGAATCACCTACTATTTGCACCGTACAGAACAAGGAAAGGATGCACAACTGCCAAAATGAAAAATGTTCCCTTCAGAAAATACCAAGTAACAATGGTCGGAGCATATGAGACGAGAACGGAATGCCATCATCCATGTTGCCTATCAATCAACAATCCTAACACAGGTTCTGTGCTAATACATCAACTTGAGACTTCTGTGCGTCTACGGGGAAAATCTGAATAATTCCTCATTCACCTTCCAAGGATGATTACATGGGACAACTCACAGGAGAAAGAAATCTAGAATCGACTGGGATTGATGCCCGCTGTTCAGAAGAAATCCTGTGTTGCCACACCACAATCTATCACAGGTTCTAACAAAGGAGAGATTATATATGAAGTATATATCCCCTTGTTCCGCATGTAGAGAGAGCACCAATGTTAGCTGGATGATACTATTGAGTAACGTGACCACCTTCCATCACTGGTCCTATGGAAGACCCGAGGCTTGTATTTCGGAAATGTGTCTTGCCAATATGGATTTTCAATCAAGTATCTCCATATCCTTCTCTCATTTTCCACAAAATGTGGTGGCTCGGCAGCTGGAGAGGTGGAGCACTGCAACAAGACCTCAGAGTCCGATAGCTGGTTAAGTGATGATGCCATTTCAGCCCAATCCGGCATCCAGCAGGCAGGTGCAATTTCAAAAGCATCACTGTGAGTATCATAAGTCTCTAGTAGCCTTCCTTGCCAATTTGGATCATAAGAAGAAACGCTCACACGAATTCTCCTAACTATTTCATCTGGACACCTTGAATTCATTTCAAAGCTTGCTGGATTAACAGCCCCAGATGAGGTCTCCACCACAAATCCACCGATTATTGGCCGTGTATTCCCGTATGAATCAGTTGTGGTATTGCTCCCAAGGACACAAAATGTACGAAGATGGAATTGCTGCCGGGACTTATACAACACCTCAAGTATCCTGCAACATAGTGGATAGGAATACCCTTCCTGTTTGATGTGCTTCCTTCCAGCAGAATGTACAACCTTTGTAGAAACATCATCAAAGCCACCAATCAGGTGAACATCAAACGGTGCATTGTCATCACCAAGTAATTCTAACATCTGTTTGAGCCCTCCCTCCACAATTTTTGGGAAGTCCATGTGGCTAATGGAGGTCAGGTTCAGCTTAAATGCTCACTTCCTTTTTCACTTACATTCCAGTCTTGTTGTTGCGAATTACTACACCCACGCATGTAGTCACCTCATCTGTGCCCACTAACTCGACGCGCGCCGGATCAACCGTGGCGAACTCCCGCTGGAACACGTACACGTGCCTCGGCGCCGCCGCCGCCGCGGCGTCCGCATCATCCTCCTCTGGCCCCGACGAGATCCGCCTCTCCGGCTCCGCCCTGAGCCTCTCCGATGCGGCGCGGAGCCCGGGGTTCCCCATGAGCGCCGCCACCAGCTCCCTCCCGCCGCTCCCCTGCAAGAATCGGGAGGGTGAGAGACGGGGTGGGAAGAAATCCCTCCAACAACCAAGTAGGCGCACCCCGCGGGAGGAGCCGAAGGTGGGGGAGGCGGAGGCGGAGACGGGCTCGCCGTCGACGAGGAGCATCGCCGATGTCGCGTCGCCGGAGTCGCCGCCGCGTCGCGGAAGGGAAGTGGTTTGCTTAATCGATTTGATTAAGCGGCCTAATCACTTCGTTTCGTTCCATCCTCGAGGAGGATTTGGATC

Explanation	CPC Score
noncoding (weak)	-0.978137

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0352700.2	6	24814478	C	T
Osa06LNT0352700.2	6	24814556	G	T
Osa06LNT0352700.2	6	24814847	C	T
Osa06LNT0352700.2	6	24816814	T	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0352700.2	osa-miR5822	Translation	3.5	20.53	1	21
Osa06LNT0352700.2	osa-miR6253	Cleavage	5.0	14.76	1	22
Osa06LNT0352700.2	osa-miR395b	Translation	4.5	16.471	1	21
Osa06LNT0352700.2	osa-miR395d	Translation	4.5	16.471	1	21
Osa06LNT0352700.2	osa-miR395e	Translation	4.5	16.471	1	21
Osa06LNT0352700.2	osa-miR395g	Translation	4.5	16.471	1	21
Osa06LNT0352700.2	osa-miR395h	Translation	4.5	16.471	1	21
Osa06LNT0352700.2	osa-miR395i	Translation	4.5	16.471	1	21
Osa06LNT0352700.2	osa-miR395j	Translation	4.5	16.471	1	21
Osa06LNT0352700.2	osa-miR395k	Translation	4.5	16.471	1	21
Osa06LNT0352700.2	osa-miR395l	Translation	4.5	16.471	1	21
Osa06LNT0352700.2	osa-miR395s	Translation	4.5	16.471	1	21
Osa06LNT0352700.2	osa-miR395a	Translation	4.5	16.471	1	21
Osa06LNT0352700.2	osa-miR319a-5p	Translation	4.0	23.753	1	21
Osa06LNT0352700.2	osa-miR395m	Translation	4.5	16.471	1	21
Osa06LNT0352700.2	osa-miR395n	Translation	4.5	16.471	1	21
Osa06LNT0352700.2	osa-miR395p	Translation	4.5	16.471	1	21
Osa06LNT0352700.2	osa-miR395q	Translation	4.5	16.471	1	21
Osa06LNT0352700.2	osa-miR395v	Translation	5.0	16.471	1	21
Osa06LNT0352700.2	osa-miR395r	Translation	4.5	16.471	1	21
Osa06LNT0352700.2	osa-miR395y	Translation	4.5	16.471	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0352700.2	6	ph6	Morphological trait	Dwarf	RZ667	RG653
Osa06LNT0352700.2	6	qLDLJ-6-1,2,3	Physiological trait	Source activity	RM217	RM3
Osa06LNT0352700.2	6	prt6.1	Resistance or Tolerance	Drought tolerance	R2549	RG716
Osa06LNT0352700.2	6	gw6	Morphological trait	Panicle/flower	RG424	R2549
Osa06LNT0352700.2	6	qGL-6	Morphological trait	Seed	R674	R2549
Osa06LNT0352700.2	6	RPLD4	Physiological trait	Eating quality	RG424	RG172
Osa06LNT0352700.2	6	nan	Physiological trait	Eating quality	RM253	RM162
Osa06LNT0352700.2	6	amy6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0352700.2	6	asv6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0352700.2	6	qDLR6-2	Resistance or Tolerance	Other soil stress tolerance	RM1340	RM5957
Osa06LNT0352700.2	6	ostd(t)	Physiological trait	Sterility	nan	nan
Osa06LNT0352700.2	6	tgw6.1	Physiological trait	Source activity	RG264	RM3
Osa06LNT0352700.2	6	nan	Morphological trait	Root	RM4447	RM5509

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus