© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0352800.1
GGAGGGAGTATCCATTTGTGGATATAGAGTTCGGATTTCTACCCATTATTTCTAAATATCAACATTTGTTAGTTGCATACCCCTAGAATAATCATTATAGCCATTGAATTGAAATCCAGTAATTCCACTTTAGCAACAACTGAGCTTTTCTACATTTTAAACAGGAACAATATAGAGCGAAGAGAACAACGTGGGCATTGGATTTTGCCGATTGAATCATGAGCACATTTGCATAATCAGAAACCGAACGGTGCACCATTTCAGTAACATTGGCACATGGAAAACCCAAATTGCAGCATGCAATTGGAATTTGCACAGGAACAGCAGCACAACGCAGGGGACGCATGCCATTTGCCACCCTGACACCCAAATTTATCTGGGTAACTAGATCGCTCCTCAAGCCAGTGCAACCCATCATAATCCTCATGAAAACATGCAACTTAACAAGTGCTGACCACTCTGGTGATCTTCAAATTCTCCGATCCCCATAAACAGTCAATGTAAACGCTAAGAAGCGATAGTAGTTTAGCTTGGTTGCCAGATCAGAACTTGTCCACAACAGTTTCGCTTGGTTGCCAGTTCAGAATTTCGACCAGTACTCCCAAACTTTCCTCTGATTTGTATGACGCATGCATCCAGAAAGGGCAGCAACCTTGTTGTAGTCAGGACCATTTTTCAGCTCAAACTGCTTGCCTAATAATGGATGGCCTTCTATCAAGAAGAAAGCTTTAAGTGATACAGGGAGACCATTCCTCGGCAGTGCCCTAAGTTGAGTGCATCGACCAATTACAAGAATCTTTAGTGAATAAAAGGTGCTCATATCAGGCAGCGATATGAGAGCAGAGCATTCTATAACCTTCATCTTTCTAAGGGAAACAAGTTCATTCAAATCTTCTAGTGATGCTAGCCCATCACAGGATTCAATTCTCAATTCCTCCAAAGCTGTGTGGCAACCAGATTGATATAGTCGTGTCACTTGGGGGCAACTTCGTAAAAGTAAAATTTGGAGGGATGGCATGTTATCCATGTCTGGTACAGATTCCAAATTATCACAATTTTCCAATCTCAACTCTTTGAGGGAGACAAGGGATTGTGATCCCTCGAGTGACATCAGCCAATAACATTTGTATATGTTTAATTGTCTGAGCATCCTCAACTGGTGCATGCTTAATGATAATTGAGATGGCATTCCAACTGTATCACAAGGTCCAAGGTCTAGTGTGTCGAGGCATACGAGGTTGTTCAGCAACTTGGATAAAGAACTTGCTCGCAACTGACACTTTATTAGTTCAAGACGTTGAAGTGATGTAGGAAGCACAGTAACCCCATCCTCATCCCACAATGTGCTAATTATGGGGTATGTATTCTCCCAAGATGATCCTAAACCAAATATTGTGAGCTCTTTGAGTTGCTTCATATTATTGAAGGCTACCTTAGGAATGTCTCTCAAATGATCTACGTAGATCTTCAGCTTTTCAACAAACTCTAGGTGATGAACACGCAAGACATAGAAGAAGCTTGACAACAGGCAGCAAAATGATCTTGTGAGTTCAAAGTTGTCCATAAAAACCTTGAAGTGGATTTGTTCCTTATCAAGTATAGCAATATGTCTGAGGGTACGCACATAGGTCGGGTATTCTCTTAACCTTGGGCATCCAGAAAATGAGAGATCTCTGAGAGCAGGAAACAACTGGTCGTTCTCTACAATACTCCATTCTAGTTTGGGCAAGCGTTCCAGCAGCAGTCTCTCCAATGAGGGGAATCCTTTACGGCCCAAGAACTCCTGATCTAGTATTTTTAATTCATCCATTCTCCGAACTTCAAGAGCTTTAAGCAATGGTAGATCCCCTAAAGGTGGAAGTACCTCCCATTTTTTACAATCACGTAAGCAAATCAATTGCAAACTGCTCAGCCAACCAGAATTCAACCAGGTGGGAGAAGTAGCACCTGGATATCCACTTATAGTTAGCTCGACAAGATTAGGGTGCGGCTTTAGCACATTAAGCACATCACAACCATTGCTAGTGTGACCATCATGGTCACCCGATCCCCATTCTAGCTCCAGCTTTCTTATGTGCTTCTTTAGCTCAAGATTGGCCTTAGCAGCTTCCTCTTTTGTTTTCACATTCTCCAGCAATCTAATTGCAAGCTCTCCACGAAGTTCATTCAGATCCTTCAGCCCAACAATACTTTGCCCCTTCTTGCCAACATGAAATTCTCCTGAACCTTCAACACATGGAAGTTGATGCATGCCTGTTAGCATGAGAGCATATGACTTCTCTATATCAACATGCACCAAGTTACTGAGTCTGTTAATGCTTTCAGGAAGACTGAAACAACCTCCAGCTATGTTCACTTGCCCCCATGAAAGATTCAAAAGTTTGTGAGAGGAACAATGTGAGCTAAATTTTCCAGAGGAATAACATGAATGATACTGTACAAACAAGGCCCTTAGATGATGAAGTCTAGAAATTGTTTTAGGTAGTGTGTAACATGTCCGCTGTATAGCTAGGAAACGGAGGTGAATGAGATTGTACACAGCATCAGGCAAGCGTTTCATGCAACAGCCACTTACATCCAGCACCCGCACCCCCTTCAGCTTGGCAAGTATACCATGAGTGAGGCTGAGTTTTGAGCAAAACCAAGACTTGTTAAAAACTAGTAGTGAACGCAATCTTCCCAAACTACCAAAACTCACAAAATTTTCCAGGAGTTCAGCAGAAACAGACAAATGCCTAATATGATGGGGTAACTCACTCGGACTGCCATGTTCAATCCTATGGCATTCGCCCCCAGAAACATGAAGTGCCAGATCATTCAATACATCATGCATAATATAGTAAATTTGGTCTCCACATCGGAACACTTGGAAAAATGAGCGCTGTAGCAAATCATTGAAATAGCCTCTGCCAATATCCTCCAGACTAGTATTGATATTTCTGTCTGAATGAACAAAACCCTGAGCTGCCCACATATGGATCAGCCTGTTTGGATCAATGCGGTAACCTTTAGGGAATAAACTGCAGTACGTAAAACACTGCTGAAGATAATTTGGTAAGCTTTCATAACTTGAGCGTAAGATTGTCATAATGTCATTAGGGTTGAGTACACTTTTCTGAAGAATTTTGTTCCATTCCAGAGCGTTGTATTTGCCACTTAAATGGCCTCCAGTCACCTTAATGGCTAGAGCTGAGCCTTTTAGGTTTTCAACAATTTGGTCCTCAATTATCTTCAACTCTGGGTAATCTTCTGGATTCCTGTTTCCAAATGCACATTTCCGGAAGAGCATTCTGCTGTCATCTTTTCCAAGGCCCTGCAAGAAAAATAAGCTTCTCGAATCTAGCATTTTTGCTACCAATTCTGCCCGGGTTGTCACTAGTATTTTGCTTCCTGTTCTCTTTCTCTCTAAAGCCTCAGAACTTATATATATATTTCTTATGGGAGCTATCAACTCCTTCCACGTTTCTCTGTTCATGTGCTCTCCAACTCTTTCATCATACCACACATCATCCAGCACTAGAAGAAACCTTTTGCACATCAGTCTATCTCGAAGCTTTTCTTGGAGCATACTGAAATTGAAACTGGCCAATTCAATATGTTCTGTGCCAGCTGTGCATGCTATGATCTCCTTAGTTAGTCTAGTTTTGTCAAAATTATGGGAGACACAAACCCATATCTTCAGATCAAAAATCTCAGTAATCCGCTCATCATTGTAAATAGCTTGTGCTAGTGTAGTCTTGCCGATGCCCCCAACACCAACAATAGAATGCACCACTGTATTAAATAACTGACAATCATAAGACAAATGTTCATCACAATCCTTCACCAATATACTTACTAGTTCATCAATCTCATTCTTCCGTCCAAAAATTGTATCTTCACGCAAAAGAGATCCTGTGGCTCTTGCTGGAGCATACTCAGGAGACTGACTGAAGCTAGAGACCTCCCCTGCCATAACTTGAGCAAACATCTCTGCGGAAGCTCTAACTCTGCCCAGTGTTTTTATAACTTCTTGTAATTTTGATCTGAGCTTATCAATGCTAACTAAACGCTTGCCAATAGAGAGAACAGATGAGAACATGCCTAGGTCTTCAATCTTTTCTTTGATCAGATAGTCAAACTCATCCAAGACATCATCAGCTTCACAGACTGCATCTTTCATTTGGTGCAATGACATCACTTGACTACTGTCTTTTCTACTTCGTCTTTCCGCTGCGCCAACCACCAACAAAATCTGTACCAAAGTGGACTCCAAATTCTTGAGATCAGACATCATCTCAGACTTCCAGGTGAACTGGCTTGATATATAGGACTGCACCACAGAAACCATTTTACGAATGATAGGTGAAACAATCCATCCTACAGAACTCATTGCTGAAAACTCAGCCATGTAATCAGAAATTCCACAGTTTGGAATAATGGAAGGAGACAAATAGGAAAATTGTTGAACATCAACTGAAGATGGTAGATGAGCGCTTCATGATCAAGGAAGAAATTGAAACCTTCTAGGAAGCAATAGCGTAGCAATGTTGAACTTCAATTCTAAGTACATGTCTTAGTTGATTTGTTTTTCCTTGTAAATAAACTTCCGTCAAGCTAATGAATAGCACTGCTCCTGATCAGTATTATGGCATAAATTCTTTTTTCCCTTCCAGAACAAGAAACCATAAAGAAGCTGTAGCGATACTGCAAGCAATGGGGATTGACAAAGTGGTGGGCATTGGCCAAAGCAAGATGGGGTTAAATGGTGAGCCATACAGTTGTCATTTTCTTCCCCCAGCACATGATTAGTTTGTCATGTGAACACTAATTCAATAAATAAATTATACCAGATTATGATCGATTCTAATTTGATGGGATTTGGTCTTTACTTATCTTTAGAGAATTGGATTGGTCACTAAATCACCAAGCCACAATTGTCCCATTAATCTCAATCTTCCTCTCACATATATTTTTCTACATAACAAATGCACGGAATCCCTGGGCGGTTTGGTCGGAAGCGCGCCAGCAGCCAGCCACACGGGAAGACGCCGATCTAGTCTTCAAAGGCAGCTGTATGATTTTGCTTAGCTGGGCCCTGAAAAAGCCACGGCGATCGGCGGAGCGGCGCCAAACAAGCCATGCTTCCGCCACAAAGCGTGTAGATCGATACGGCCGCCCGCCCCGCCGCCAGCGGCCGCCCGGCCAAGCCGGTGAACCGGAGCACCCGCACCACGTAGGCGGTGCAGCGCCCCCCGGATCCCGGCTCACGAGGGCAGGCCATGGACCTCCAGTGACCTCGCCGGAGTATTCGCCCGGTCTGCGCCGGCCGCGGCGGAGGCGTACGCCCGCCGCCGGTGGCCACGTCGGCCACGTTCTCGTGGGCCAAAAAATACACCCATGAGTTCACTCTCTTCTGT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0352800.1 | 6 | 24950581 | T | C |
| Osa06LNT0352800.1 | 6 | 24947201 | T | C |
| Osa06LNT0352800.1 | 6 | 24947245 | T | C |
| Osa06LNT0352800.1 | 6 | 24947285 | A | G |
| Osa06LNT0352800.1 | 6 | 24947571 | G | A |
| Osa06LNT0352800.1 | 6 | 24947580 | G | A |
| Osa06LNT0352800.1 | 6 | 24948117 | T | C |
| Osa06LNT0352800.1 | 6 | 24948465 | G | C |
| Osa06LNT0352800.1 | 6 | 24948981 | T | G |
| Osa06LNT0352800.1 | 6 | 24949131 | T | C |
| Osa06LNT0352800.1 | 6 | 24949167 | A | G |
| Osa06LNT0352800.1 | 6 | 24950995 | T | G |
| Osa06LNT0352800.1 | 6 | 24952074 | T | C |
| Osa06LNT0352800.1 | 6 | 24952350 | A | C |
| Osa06LNT0352800.1 | 6 | 24952475 | A | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0352800.1 | osa-miR5536 | Cleavage | 4.5 | 19.734 | 1 | 22 |
| Osa06LNT0352800.1 | osa-miR5537 | Cleavage | 5.0 | 19.147 | 1 | 22 |
| Osa06LNT0352800.1 | osa-miR5544 | Translation | 5.0 | 15.085 | 1 | 22 |
| Osa06LNT0352800.1 | osa-miR169a | Cleavage | 4.5 | 19.401 | 1 | 21 |
| Osa06LNT0352800.1 | osa-miR395c | Cleavage | 5.0 | 10.96 | 1 | 21 |
| Osa06LNT0352800.1 | osa-miR319a-3p.2-3p | Cleavage | 4.5 | 14.697 | 1 | 20 |
| Osa06LNT0352800.1 | osa-miR319b | Cleavage | 4.5 | 14.697 | 1 | 20 |
| Osa06LNT0352800.1 | osa-miR169b | Cleavage | 4.5 | 19.401 | 1 | 21 |
| Osa06LNT0352800.1 | osa-miR169c | Cleavage | 4.5 | 19.401 | 1 | 21 |
| Osa06LNT0352800.1 | osa-miR169e | Cleavage | 5.0 | 19.401 | 1 | 21 |
| Osa06LNT0352800.1 | osa-miR169f.2 | Translation | 5.0 | 17.968 | 1 | 21 |
| Osa06LNT0352800.1 | osa-miR169f.1 | Cleavage | 5.0 | 19.401 | 1 | 21 |
| Osa06LNT0352800.1 | osa-miR169g | Cleavage | 5.0 | 19.401 | 1 | 21 |
| Osa06LNT0352800.1 | osa-miR395o | Cleavage | 5.0 | 10.96 | 1 | 21 |
| Osa06LNT0352800.1 | osa-miR1854-5p | Cleavage | 4.5 | 16.809 | 1 | 21 |
| Osa06LNT0352800.1 | osa-miR1854-3p | Translation | 5.0 | 20.598 | 1 | 22 |
| Osa06LNT0352800.1 | osa-miR1857-3p | Cleavage | 4.5 | 16.745 | 1 | 21 |
| Osa06LNT0352800.1 | osa-miR2055 | Cleavage | 4.5 | 10.242 | 1 | 21 |
| Osa06LNT0352800.1 | osa-miR2095-5p | Cleavage | 4.0 | 14.918 | 1 | 22 |
| Osa06LNT0352800.1 | osa-miR2101-3p | Translation | 5.0 | 17.95 | 1 | 22 |
| Osa06LNT0352800.1 | osa-miR2873a | Translation | 5.0 | 14.911 | 1 | 24 |
| Osa06LNT0352800.1 | osa-miR2923 | Cleavage | 4.5 | 11.725 | 1 | 22 |
| Osa06LNT0352800.1 | osa-miR5145 | Cleavage | 5.0 | 19.939 | 1 | 24 |
| Osa06LNT0352800.1 | osa-miR5340 | Cleavage | 3.5 | 11.094 | 1 | 23 |
| Osa06LNT0352800.1 | osa-miR5340 | Cleavage | 4.0 | 18.007 | 1 | 23 |
| Osa06LNT0352800.1 | osa-miR5507 | Cleavage | 3.5 | 5.224 | 1 | 21 |
| Osa06LNT0352800.1 | osa-miR5523 | Cleavage | 4.5 | 10.709 | 1 | 22 |
| Osa06LNT0352800.1 | osa-miR5523 | Cleavage | 4.0 | 13.018 | 1 | 22 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0352800.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0352800.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0352800.1 | 6 | qDLR6-2 | Resistance or Tolerance | Other soil stress tolerance | RM1340 | RM5957 |
| Osa06LNT0352800.1 | 6 | ostd(t) | Physiological trait | Sterility | nan | nan |
| Osa06LNT0352800.1 | 6 | tgw6.1 | Physiological trait | Source activity | RG264 | RM3 |
| Osa06LNT0352800.1 | 6 | nan | Morphological trait | Root | RM4447 | RM5509 |
| Osa06LNT0352800.1 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Osa06LNT0352800.1 | 6 | prt6.1 | Resistance or Tolerance | Drought tolerance | R2549 | RG716 |
| Osa06LNT0352800.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0352800.1 | 6 | gw6 | Morphological trait | Panicle/flower | RG424 | R2549 |
| Osa06LNT0352800.1 | 6 | qGL-6 | Morphological trait | Seed | R674 | R2549 |
| Osa06LNT0352800.1 | 6 | RPLD4 | Physiological trait | Eating quality | RG424 | RG172 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)