Transcript

Sequence

>Osa06LNT0353400.1

TAGTAGGGAAGCTTCTTTTCTTTTCTTCCTTTTTTTTTTGCTAAATTACAGGGATTCTGAGAGGGTACTGCATGCTACTGGACTATTGTCACGTCTGGCAAAACCAGAAAATTCATCGAAGATAGGAGTAGTTACCAGGAGTAGTTGTGTATGACTAAATAATTATACAGTGCAACACTGACAACTTCTGCACAAAATGGGCTGAGTGGGATTTGCCTGGGATTTAATTTAATTAGTTCATATGCTAAATCCCAAGAAAATCCCCTCTCCAAACGAACAAAAGACGCGCAGAAGGTATAAGCTACTAGTACTAGTTCAAATCATAAATGAACAGCCATTATGGCTTTTTGACATCTTGGGTGTAGATATAATCCGTGTGGAATTCTTCCCATTTGGCTGAATCAAACTGCAGCTGCCCATTGTTATTGGAACCTGTACTTCCTCCATTCTCTCTGCTTGGTTCCTGGGTGGTGGTTGTGCCGTTGCCGACGCCATGGCTGTGCTTCTCCTGCAACAGGAGCTTCCTGGAATGGGTATCTTGACCTAGCAGGAGGAGAGCAAGGCATAGGAGGCAGAGTGCCCTAGCTGTTCTTCCTGGATTCACCATTCTGAGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACCAAAAGAAAGAAGAACACACTTGCTAATTAACTGATCAACTTTTTTGCTGCTGCTTCTTCTTTCTTCTTCTTCTTTGTTTCTTTGCTT

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.912887

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0353400.1	6	25670946	T	G

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0353400.1	osa-miR5788	Translation	5.0	19.589	1	21
Osa06LNT0353400.1	osa-miR2919	Cleavage	4.0	12.644	1	19
Osa06LNT0353400.1	osa-miR2919	Cleavage	5.0	10.331	1	19

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0353400.1	6	amy6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0353400.1	6	asv6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0353400.1	6	qREP-6	Resistance or Tolerance	Other soil stress tolerance	nan	nan
Osa06LNT0353400.1	6	tgw6.1	Physiological trait	Source activity	RG264	RM3
Osa06LNT0353400.1	6	ph6	Morphological trait	Dwarf	RZ667	RG653
Osa06LNT0353400.1	6	nan	Morphological trait	Root	RM4447	RM5509
Osa06LNT0353400.1	6	qLDLJ-6-1,2,3	Physiological trait	Source activity	RM217	RM3
Osa06LNT0353400.1	6	qGL-6	Morphological trait	Seed	R674	R2549
Osa06LNT0353400.1	6	gw6	Morphological trait	Panicle/flower	RG424	R2549
Osa06LNT0353400.1	6	prt6.1	Resistance or Tolerance	Drought tolerance	R2549	RG716

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus