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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0353800.1

GGATAGTGAAATATGCTCAATTGTTACATGACTTCTGAGTATGCTACTCAAAAGTAAACCTTTGTATGGAATATCTGCAATTCTTGTGTCCCTCCTCACTAAGTTATCAAATAAAATCATGTTTCAAATTGTCCTACTGGCAACTGGCAAGCCTGTAAGTGTCAATTTAATTTACACAACTGTAACTAAAATTCGAGGTACTAAAACATCCTCATTCACTACAGTCTACAATAAACCTCTGAAAAACGAATAAGAGTATATAGCACAACCACACAAGATCCAAATCACATTGTGAACCGAAATGCAAAGTGGGTTGTTGGAGCCATGGGAGTCCAGTTTTTTGCATGCGATTTGTGCAAAGCAGCAGAGGAATATTTGTATGTTCAGAGTTCGTCAGACCATATAAACTTCATCATCTGGGTCTTCGTCTCCTACAAGTATGAGACCCTCGACGTGGACTGGAAACATACACCTCGTGAACTGGCAGCCGGTGGTTACCACGCCGGACGGCGCGTCGACGATGTCGTAGGCGTGGTGCTTCTTCAGGACTCCAATCACACTAGCAGTGTCCCCTTCCCTGATGAACCCTTCTTTGACATGCACAGTGCCATCACACGATAAATCATTGCTTGCCATCCAGCTTTTGAGGTTCCTTGATGCTCCCTTCCTCTCGCCATCTAAGCTGTCCGTCTTCTGCTTAATCATCCAGGTGATCTTGCCACCCTCGCCAGCTCTCACGTAGAACCTCTTTCCAGTGTTCCTGTCAGAGATGTAGAAATTCGCCGTCCGTGTCTCAGAGTGTGTCTGTTGCCACCGGAAGCAGCATCCACGGCGCTCATACAGCTGCACAGACGTGAAGATGCACCGGGCTGCGTCGTGGAAGCGTGCCCCGAGAGGTTGGTGGCCGCAGGTGACTTGCCCGGTGATCTTGACGAGCTCGCCGATGGGCATGTCGCTCTGGTCGAACACCGTGTCGGGCAGCCGCCGGAAGAACCTCTCCGCCTCGGCGTCGCGCCGGCGCACGTTCCACGCGAACGCCGCCGCGACGGCGGCCACCGCGCCGCCCGCCGCCGAGAGCACCTCCCACCGGTGCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.820254
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0353800.1 6 25859903 T C
Osa06LNT0353800.1 6 25860590 T G
Osa06LNT0353800.1 6 25861020 T C
Osa06LNT0353800.1 6 25861068 A C
Osa06LNT0353800.1 6 25862560 T A
Osa06LNT0353800.1 6 25862655 T C
Osa06LNT0353800.1 6 25863000 T G
Osa06LNT0353800.1 6 25860116 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0353800.1 osa-miR2104 Cleavage 5.0 15.869 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0353800.1 6 amy6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0353800.1 6 asv6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0353800.1 6 qREP-6 Resistance or Tolerance Other soil stress tolerance nan nan
Osa06LNT0353800.1 6 tgw6.1 Physiological trait Source activity RG264 RM3
Osa06LNT0353800.1 6 ph6 Morphological trait Dwarf RZ667 RG653
Osa06LNT0353800.1 6 nan Morphological trait Root RM4447 RM5509
Osa06LNT0353800.1 6 qLDLJ-6-1,2,3 Physiological trait Source activity RM217 RM3
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus