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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0353900.1

CTAACTTCTTTCCAATTTCCATAACAGCAATGAAGCAGCACCGCACATCATAGGAATCACGAAACTTGCTCACTTCTCACAGAAACTTCTAATATGCTCAGAAATAAACAAAGGTAATAAGAAAGACGAGCAGATTTGAATGCGTCCTTCAAATCTGCACTCAGCAAAGGCAACGCAACTAGACTGATCGAAGCTTATCACTAAAAGAAAATTTTAAGAAAACACAAAGCAATTGCAGAGAAAAATACAACCAAAGAAAGAACGGAGGAACATTGGTCTGGACTCTGGAAAGCTTAAGCTCATGCTGGCTGAGATCGAGGGGTTGAGGCAGCTTCTACTTTTGTCAGGGTTACAGATCGCAGTAATTCCAGTGTGCTCGATAATCCAAGAAAATGTGAGAGGATCGTGTTGGCTGAAGCCTGAACAAGGAAAACATCTAAAGATAGAACAGGGCTCTGGCCAGGAGATATTCCCTGGTAGTACGGCACTGCAGATGTAGTGAGGGCTTTTGCTACCAATGCCCCTACAGTTGCCTGCATACCAAGAATTGCAGCACCCATTCCAAGAACATTGAGCACAATACCATTTTTGAGATTTTTTACCACATCGGCACGTGGAGGAGCCTGGAAAAAGAGCCAGTAATTTTAGTTATGTCTGGAAAGCGTGGAGGAGCCTGGAAAAAGAGCCAGTAATTTTAGTTATGTCTGGAAAGCAGTTTGACATGACTGCTATGGATAATAGAACCAAATGCTATTACTATGTCAGTTTAAATTAAAACACGGCGAACAGTAGTACACCCCTGGGCATAATAATATGATACTACCATTCAATCAGTTTGTTCGGCAATATGATATCAAGATGATTATGGGCAGGTACGAGATGGGATGCCAATATTAGTGGGTGCATGGAAGCATCAGTTTTTGAGCAAAGAGATGATAGCGCAGTGCTATATATATTCTAGGAAATGACAGTACCTTTGCAGGTTTGTTTGCTGTTCTCTTAAGCCTTTGTGAAAGACGGATATAACCAAAAGCCCAAAAGACTGAAATAAATGCCGCAACAATACCAATTGAAGTT

Coding Potentia
Explanation CPC Score
noncoding -1.06622
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0353900.1 6 25928552 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0353900.1 osa-miR5789 Cleavage 5.0 11.648 1 21
Osa06LNT0353900.1 osa-miR166b-5p Translation 4.5 22.364 1 21
Osa06LNT0353900.1 osa-miR166c-5p Translation 4.0 22.364 1 20
Osa06LNT0353900.1 osa-miR166d-5p Translation 4.0 22.364 1 21
Osa06LNT0353900.1 osa-miR397b Cleavage 4.0 21.598 1 21
Osa06LNT0353900.1 osa-miR166h-5p Translation 4.5 22.364 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0353900.1 6 amy6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0353900.1 6 asv6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0353900.1 6 qREP-6 Resistance or Tolerance Other soil stress tolerance nan nan
Osa06LNT0353900.1 6 tgw6.1 Physiological trait Source activity RG264 RM3
Osa06LNT0353900.1 6 qLDLJ-6-1,2,3 Physiological trait Source activity RM217 RM3
Osa06LNT0353900.1 6 nan Morphological trait Root RM4447 RM5509
Osa06LNT0353900.1 6 ph6 Morphological trait Dwarf RZ667 RG653
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus