>Osa06LNT0354400.1

CGGTTCACAACCCTTTGAAACTTTATTGAAGATACTGTCACATTGCGAAACTGTCGCTGGCTGTGAAATGCTACATGTGTACAGCACTAATCATCTGCTGATCGGATTGTCTTCATCATACAATACAGTGCTCAATAATAGTAATCCCACAAACCTGTGCATGGTTCCTTTACATGAGAGCCGAGAGCCTCTGCCTCACTCGGTCGAGGCTCAAGACCAAAGGGCAACAGAGCTATTCCGCCACCGTTTCAGAAAGTCTGCGATGCAGTGTTCTGAAAGATCAACTCCTAGAACACGGATATCAAGTCCTCAATTTGATCCAAGTGAAAATGCTTCTTCTTCAGCCTCCTGCGGCGAGTGTTGCTTGCCCAATACTGGTTGTGAAACACCACATTGTCCGCAGGTACATGCTTCCCATCATCGTTTCTATTCCACTGGTAGATAGCATGAGTCCTGTTTTTCAGTTGCAAGATCGAATGACCATAACTAGCCTCCCTGAATGCAGAGTAGTCTGGCTGTGGATCACTGAACCTTGAAGCAAGCCCTTCCTGGTTGCCTCCATCACCAACTGTTATGTACACAGGAGCAGATTTGTCTGGCACTGGATATCGATTACCCGATGTTATGTTGTAGTTGATGTTAGAGATACGATACGATCTCTCATAAGCATGCACATGCCCTGCAAATACCAAGTCAACCTTGTACTTCACAAACCATTTCTCAAAAGCAGCCCTCATACTCTCACCCTCCATGTAATGTGCTTCATTGCTGTTGTACATGGGAGAATGCATGAGAACAATAAGCCAAGGAGTCTTCTCTCTATCCACATGCTTCAATTCATACTTCAACCAGGTCCATTGAGGAGTGTATTTTACGAATGGAGAATAGCTAGAAAGCACAATGATATGAGCAGATGCACGTCTGACTGCATACCACATAGGAGAACTGCTCTTTGATGCCAAATATGGAGTGTGACATCTATGCAGATATGGCTTAAATGTAGAAGTTTCTCCCAGATCAGGCCTGTATTCAATTTCATGGTTACCAGCGCTCCAAATCCATGGTTGATAAGCGGTACTACGTTCCACAAGCCGCCCCCAAGAATCCCAACGAACACCATCATTATGTTGATATCTATCAGCATATGACAAATCCCCAACAAATAAAACAGTTTGACCTTCGCTTTTCTCATAATGTTGAAGGGTTGAGAGGGAATTAAATGTCTGCCCCAGATCACCAATTATGCCAAATGTGTATGATGCATCTGGATCAATTGCTGGAGGAGTTTCAAACCAAAATTCTCGAGCTGAATCTCCACTTCCAATCTTATAATAATATTTGGTGTTATACTCAAGACCATCAACAAGGCAATGGTGAATATATCCAGATTTATAGTCGTAAAAGGTATAATTTGTTACTGTTCCTTCCACTCTCTGATCATACTGGTGCTCATTTTTACCATAGAGCACCTCACTTGTCCCAGGTTCTGCTACAGTAACCCATGATACTATAACAGCTTTTCCATTATAGTCACCTTGAGTGATATGAACCTGCTGTGGCGCATTGTAGCCGTTTGGAACCGCAAACCATTCGCTTTCTAGAGGTATATCAGTCGATGGGTACTCCGTACGCACGTAAGAGCTCGTGCGGCCACAGGAGACGCCATTGACAAGGCACAGAAGAACATGTAACAGTAACAACGCAAATCTCCAGCCCATCACTGATGCAGAACACTACCGATCCCCGTTTTGAACCTGATTCGAACCTCCCGAGACGGACGCGCCGGTGGAATGGGGGCCGCGCCGCCGCGCCGCCTCGCCGGCGAAGACGACGGAGAGGATGGCGAGCGGGAGAGAAGCCCACCACCCACCAGCGGAGGCGAGGAGTGAAGGCGGCGTAGCAAAGCTGACACCTCACGGAAGCAAACTCTGTAGTACAAGTATACCGCACGGCTCGTCTACTACGGTGGTGGCGAGAAAATGGAGGAGAAAGCGTAGGATCGCAGAGGATCTACTGATTCGAAGTCGAGACGAGGAGGAGGATGATTCGAAGCGAAGCTGGAAAAAGGGTGGGAGGATTCGCTTACCGTGCAGGGGAGGGGATCGTCTCGCGCTGGGTT

Explanation	CPC Score
noncoding	-1.14723

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0354400.1	6	26254405	A	C
Osa06LNT0354400.1	6	26254708	G	T
Osa06LNT0354400.1	6	26256478	T	C
Osa06LNT0354400.1	6	26256927	G	A
Osa06LNT0354400.1	6	26257404	C	G
Osa06LNT0354400.1	6	26257832	T	A
Osa06LNT0354400.1	6	26259230	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0354400.1	osa-miR528-3p	Translation	4.5	17.997	1	21
Osa06LNT0354400.1	osa-miR812f	Cleavage	5.0	17.959	1	24
Osa06LNT0354400.1	osa-miR2097-3p	Cleavage	4.5	13.326	1	22
Osa06LNT0354400.1	osa-miR2098-3p	Translation	4.5	15.091	1	20
Osa06LNT0354400.1	osa-miR2920	Cleavage	4.5	21.359	1	23
Osa06LNT0354400.1	osa-miR5509	Cleavage	4.5	11.076	1	21
Osa06LNT0354400.1	osa-miR5523	Translation	4.5	16.075	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0354400.1	6	amy6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0354400.1	6	asv6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0354400.1	6	qREP-6	Resistance or Tolerance	Other soil stress tolerance	nan	nan
Osa06LNT0354400.1	6	tgw6.1	Physiological trait	Source activity	RG264	RM3
Osa06LNT0354400.1	6	nan	Morphological trait	Root	RM4447	RM5509
Osa06LNT0354400.1	6	ph6	Morphological trait	Dwarf	RZ667	RG653
Osa06LNT0354400.1	6	qLDLJ-6-1,2,3	Physiological trait	Source activity	RM217	RM3

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus