\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0356400.2

GACAAGCTAAAAAGGAGAAATGGGCTGCATTGATTTGGACATACATATGTACTAAAACTTTGAGAAATCAAATACACAGAATCGTCTTAACGAAAGCTGACCAAATATAATATTTTTCCATACATCCTCTATAAACAACATATATTCGAAATTGTGTTCACATATAGCTCCACAACAATGTTTTGGAAGGACATATGTATGCCTTATTTTACCACTGGCTTATTACCACAAAATAACCACAAGAAATTAATTGTTTGCTTGCTCACGCGTAGCGTGATCTCTTACAAGACAAAATTATTTAGAGGTTAATAATTATCATGCAACCCAATGCAAGAATACTCATGTCTATTAATTAGACGTTGATACCACTCTTGTATTCAGAGCCGGCCGTAAAGCTTTCGGG

Coding Potentia
Explanation CPC Score
noncoding -1.17699
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0356400.2 6 27334017 T C
Osa06LNT0356400.2 6 27330359 A G
Osa06LNT0356400.2 6 27330474 T C
Osa06LNT0356400.2 6 27330757 G A
Osa06LNT0356400.2 6 27330876 A G
Osa06LNT0356400.2 6 27333499 A G
Osa06LNT0356400.2 6 27334223 G T
Osa06LNT0356400.2 6 27334386 A T
Osa06LNT0356400.2 6 27334769 T A
Osa06LNT0356400.2 6 27339935 C T
Osa06LNT0356400.2 6 27340326 A G
Osa06LNT0356400.2 6 27340333 A G
Osa06LNT0356400.2 6 27340552 C T
Osa06LNT0356400.2 6 27340826 A G
Osa06LNT0356400.2 6 27342569 G A
Osa06LNT0356400.2 6 27343013 A G
Osa06LNT0356400.2 6 27343684 G A
Osa06LNT0356400.2 6 27343709 A G
Osa06LNT0356400.2 6 27345460 T C
Osa06LNT0356400.2 6 27345766 A T
Osa06LNT0356400.2 6 27345854 T G
Osa06LNT0356400.2 6 27345871 T C
Osa06LNT0356400.2 6 27346435 A G
Osa06LNT0356400.2 6 27346631 C G
Osa06LNT0356400.2 6 27346670 A G
Osa06LNT0356400.2 6 27335133 T C
Osa06LNT0356400.2 6 27345168 T A
Osa06LNT0356400.2 6 27347764 T C
Osa06LNT0356400.2 6 27347993 G T
Osa06LNT0356400.2 6 27349285 A G
Osa06LNT0356400.2 6 27349313 T C
Osa06LNT0356400.2 6 27349497 T C
Osa06LNT0356400.2 6 27349822 A G
Osa06LNT0356400.2 6 27349928 C T
Osa06LNT0356400.2 6 27349986 A G
Osa06LNT0356400.2 6 27350022 T C
Osa06LNT0356400.2 6 27350057 T C
Osa06LNT0356400.2 6 27350084 A G
Osa06LNT0356400.2 6 27350236 A G
Osa06LNT0356400.2 6 27350249 A G
Osa06LNT0356400.2 6 27363250 T C
Osa06LNT0356400.2 6 27363315 G A
Osa06LNT0356400.2 6 27363420 T G
Osa06LNT0356400.2 6 27363472 A C
Osa06LNT0356400.2 6 27363528 C T
Osa06LNT0356400.2 6 27363734 T C
Osa06LNT0356400.2 6 27363913 G A
Osa06LNT0356400.2 6 27366144 G A
Osa06LNT0356400.2 6 27366002 A G
Osa06LNT0356400.2 6 27366429 A G
Osa06LNT0356400.2 6 27366625 T C
Osa06LNT0356400.2 6 27366915 A G
Osa06LNT0356400.2 6 27367321 C T
Osa06LNT0356400.2 6 27367766 A G
Osa06LNT0356400.2 6 27368482 A G
Osa06LNT0356400.2 6 27368578 T C
Osa06LNT0356400.2 6 27369226 A T
Osa06LNT0356400.2 6 27369471 T G
Osa06LNT0356400.2 6 27369548 T G
Osa06LNT0356400.2 6 27369745 C T
Osa06LNT0356400.2 6 27369755 C T
Osa06LNT0356400.2 6 27369769 T C
Osa06LNT0356400.2 6 27369859 T C
Osa06LNT0356400.2 6 27369996 C T
Osa06LNT0356400.2 6 27370031 C T
Osa06LNT0356400.2 6 27370289 T C
Osa06LNT0356400.2 6 27370678 C T
Osa06LNT0356400.2 6 27370748 A T
Osa06LNT0356400.2 6 27370765 A T
Osa06LNT0356400.2 6 27370773 A G
Osa06LNT0356400.2 6 27370856 T C
Osa06LNT0356400.2 6 27370867 A G
Osa06LNT0356400.2 6 27371416 G T
Osa06LNT0356400.2 6 27371774 C T
Osa06LNT0356400.2 6 27371775 G A
Osa06LNT0356400.2 6 27371907 A G
Osa06LNT0356400.2 6 27372055 T C
Osa06LNT0356400.2 6 27372220 T C
Osa06LNT0356400.2 6 27372341 A G
Osa06LNT0356400.2 6 27372548 A G
Osa06LNT0356400.2 6 27372600 T C
Osa06LNT0356400.2 6 27372621 A G
Osa06LNT0356400.2 6 27372622 T C
Osa06LNT0356400.2 6 27372628 T C
Osa06LNT0356400.2 6 27372869 A G
Osa06LNT0356400.2 6 27372917 C T
Osa06LNT0356400.2 6 27373002 C G
Osa06LNT0356400.2 6 27373200 T C
Osa06LNT0356400.2 6 27373220 A G
Osa06LNT0356400.2 6 27373334 A G
Osa06LNT0356400.2 6 27377601 A G
Osa06LNT0356400.2 6 27377688 C T
Osa06LNT0356400.2 6 27337270 G C
Osa06LNT0356400.2 6 27337702 G A
Osa06LNT0356400.2 6 27346852 C T
Osa06LNT0356400.2 6 27370892 A G
Osa06LNT0356400.2 6 27370907 A C
Osa06LNT0356400.2 6 27378079 T C
Osa06LNT0356400.2 6 27343309 C T
Osa06LNT0356400.2 6 27345073 A T
Osa06LNT0356400.2 6 27363604 G T
Osa06LNT0356400.2 6 27364541 T C
Osa06LNT0356400.2 6 27331282 A G
Osa06LNT0356400.2 6 27331797 C T
Osa06LNT0356400.2 6 27331582 T C
Osa06LNT0356400.2 6 27335154 C T
Osa06LNT0356400.2 6 27335183 A G
Osa06LNT0356400.2 6 27335436 A G
Osa06LNT0356400.2 6 27338589 C T
Osa06LNT0356400.2 6 27338627 T C
Osa06LNT0356400.2 6 27339896 T C
Osa06LNT0356400.2 6 27339922 A G
Osa06LNT0356400.2 6 27331250 T C
Osa06LNT0356400.2 6 27331355 T A
Osa06LNT0356400.2 6 27332106 A G
Osa06LNT0356400.2 6 27332436 C T
Osa06LNT0356400.2 6 27332437 C T
Osa06LNT0356400.2 6 27332441 A T
Osa06LNT0356400.2 6 27331422 C G
Osa06LNT0356400.2 6 27332495 G A
Osa06LNT0356400.2 6 27332531 A G
Osa06LNT0356400.2 6 27335278 T C
Osa06LNT0356400.2 6 27335187 T C
Osa06LNT0356400.2 6 27335333 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa06LNT0356400.2 DTM_#DNAt_MULE_japo_Os0166 Chr6 + 27331181 27332617 1436
Osa06LNT0356400.2 DTM_#DNAt_MULE_japo_Os0297 Chr6 + 27335124 27335588 464
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0356400.2 6 qLDLJ-6-1,2,3 Physiological trait Source activity RM217 RM3
Osa06LNT0356400.2 6 ppl6.1 Resistance or Tolerance Drought tolerance RM3 CDO78
Osa06LNT0356400.2 6 nan Morphological trait Culm/leaf RG653 RZ140
Osa06LNT0356400.2 6 nan Resistance or Tolerance Blast resistance RG778 RZ682
Osa06LNT0356400.2 6 amy6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0356400.2 6 qREP-6 Resistance or Tolerance Other soil stress tolerance nan nan
Osa06LNT0356400.2 6 asv6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0356400.2 6 tgw6.1 Physiological trait Source activity RG264 RM3
Osa06LNT0356400.2 6 ph6 Morphological trait Dwarf RZ667 RG653
Osa06LNT0356400.2 6 nan Morphological trait Root RM4447 RM5509
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus