>Osa06LNT0356500.1

TTAGATGTTGATGCCACTCTTGTATTCAGTGCCGGCCGTAAAGCTTTCGGGGATGACGTCGTCGACGACACGGTAGCCACCGTTCTTGACAAGGAAGCGGACGGAGAAGGGGCCCTTGAGGGTCGCCTCACTCTTGAGCGACCAGGTGTTAGTCGACGACTCCTTGAGCCGACGACCAACAATGCCGCCACTGCCACGGCGAGCCGGAAGGAGGACAACAAGGCCATTGGCGAGCTAGCTAATTTTTTGGTGTTATCTTTCTTGTTTATGTACTGGTAGAGGGATGGATCGATGTGTTTTGTGATCCA

Explanation	CPC Score
noncoding (weak)	-0.942947

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0356500.1	6	27334017	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0356500.1	osa-miR166h-5p	Cleavage	5.0	20.123	1	21
Osa06LNT0356500.1	osa-miR1432-5p	Cleavage	3.5	19.996	1	21
Osa06LNT0356500.1	osa-miR1428b	Cleavage	4.5	19.876	1	21
Osa06LNT0356500.1	osa-miR1428c	Cleavage	4.5	19.876	1	21
Osa06LNT0356500.1	osa-miR1428d	Cleavage	4.5	19.876	1	21
Osa06LNT0356500.1	osa-miR1428e-3p	Cleavage	4.5	19.876	1	21
Osa06LNT0356500.1	osa-miR2121a	Translation	5.0	23.304	1	24
Osa06LNT0356500.1	osa-miR2121b	Translation	5.0	23.304	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0356500.1	6	ph6	Morphological trait	Dwarf	RZ667	RG653
Osa06LNT0356500.1	6	qLDLJ-6-1,2,3	Physiological trait	Source activity	RM217	RM3
Osa06LNT0356500.1	6	ppl6.1	Resistance or Tolerance	Drought tolerance	RM3	CDO78
Osa06LNT0356500.1	6	nan	Morphological trait	Culm/leaf	RG653	RZ140
Osa06LNT0356500.1	6	nan	Resistance or Tolerance	Blast resistance	RG778	RZ682
Osa06LNT0356500.1	6	amy6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0356500.1	6	asv6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0356500.1	6	qREP-6	Resistance or Tolerance	Other soil stress tolerance	nan	nan
Osa06LNT0356500.1	6	tgw6.1	Physiological trait	Source activity	RG264	RM3
Osa06LNT0356500.1	6	nan	Morphological trait	Root	RM4447	RM5509

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus