© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa06LNT0356900.1
CCACCAAACGCCTTGGCCTCATATGCCATTCAACATTTCATCCAGATGTACTATACACTACGGTGCCGTTCTTACAAGTTTGTATAACTTGAATTCCATAGTTCAGACTGCAACAATCCGAAATCCATGAAAAGTATAATAACTTAAGGGTGAATTAACTTAAATTCTAAATTAGTACTACAGTTCATGGAACAGATACTTCCTATAACTTGGGAAGTTCTCTGCCGAAAATCAGTTGTTCTGCTCAGGGTACCCTTTTGACTGCTCCAGGGAATCAGTTGTGTTCCATGTCTCTTAGTTGACGTAATTTTGTACAATTGCTTCCGCACACCAGTCGTGCACTCGTGCTTCCAATGTTATGCCTGGCGACAAACTGCCAGTGACACTTCCACAGTTCAACTGATGCTACACGTTGGAGCAGATTTCTTCGTAGGTATTACCTCCTTCCTGAAAATATAAGGGATTTTTGCATTGCCGAAATCCCTTATATTTTGAGATGAAGGTAGTAACATGCTTTTCGTCTTCCACGAGTTTATATAGCCTAACTGCCAGAGTGTCTCACGATATAAACGTCCTTCCATTTGTTGTTATTGGTATTTCATGACGGTCATCGTCCAACCACTTCAACCTGTTGCTGCGGTTGAGCAGCCTATCCCACCATGCTGCTCAGGATTTGTAGCTTCGAACAGATATACTGATCTCTGCTCTTTCCATAACCTTACAGGTGAACAGCAGGAATGAGTTCATTTCTGCATCCGGAAGTTGGAAACACGTGGTGAAACCCACTGTCACATGGGGAGCAGGAACAACTATCCCTGAATATATGTGCATTCTGCGTGCAGCACCTTCTTGTTCCTGAATTAGCCATTTCAAGGCTCCCCCAGCTTTTTTAATAATTGACATAACCATTCTGAGTGTCCAGGACGCAGTACAGGACATTCCAGCCCAACATCGCTTGTACTGTGTGGAATCCCTAGGCTCTTCTCATCTCTATAGCTCATCGAAATCAATACTTGGCATTATTTTCTTCAGTAGGTTGAATGATGACACAGGTGTGTAACATTCTGCACTGAACTGCAGCAGCTCATTTTCTAGAACAGTAAAAGCATCAGCAAAAGCCTTGATACATTGGTGAATGCGGAAACAGTTCCTGCCCACATTATTGGCAGGGCAAAGAGGATCATCAATGTGTATTGGATCAATGCTGTGACCTCTTTCTCGGTTCAAATAAATGCCACTTCCTTGGATAGAGATACGCATATGGCGCGGATCAAATACATTCCCAAAAAAGTATAGGAAATCCATCAAAAGGCTGCCCAGATTTTGGTTAATGGGCCGACCAAGATGATGCTCATGCTGAAGAAAACGAACGATTAACAGTACCAAACAATATGAACTTAGACCACCAGAATATGGGTGATCCAAACTCCGGTCAGCCAAAAACTTCTTCAGTATTAAGGCAAGAGGCACAGCAGCAGGAAATTGCTGAGTTAATTCACAGACCAACTCAGTTGTCTGGAGTCCTGTGTGGGATGGTGATTTGAAACTTATATCAAGACGAATTGACTGCACAACATTGCCATCATCCTTGTTTATTCTTGAACACATTGGCATGCTGCTACCTTCTGAACTAGAGTTGTCAGAACGAGAAGGGCTCCCTTGATCTCCAAGCACATTGATGGATAATTGTTCGTGTGAGCTATCCAGAACAGAAGAATATTCACTGGACAAATTTGTGTCACAGGGCACTTGAGCTACAAGCATGATCACAGGTATCGCCGTGTTTTCAACTGTTTTGAGGGAATCAGTCCTAACCCAGTCCTGGTTTGCAAGACACCGTGCTGCATGCTGGAGACACGTTTCCTTGATGCCATTCCTGCCTTCCAAAATCCCAGCTTCTTTTATAGGTTCCAAATTACGAACTGGTGGAAGAGAAATTACAAGATCTACATCGCTTGTTGGAAGAGCCAAACCAGTGGCATTTGAGCCAAATAGATTTGTACGGGAACGAGGCCAGAGAACTTGCAAACACCGTGTGACCCTTTTGACAGCCCAATTAATATAGGGCTTCCTCACCAGATTCTCGGCAGAAACCTGCTTACAGAATTGATCTATCTCTTCGTGTAGTGCATTGTGCATCAAAGAGAGGGATGCCTTGCTAGAAGAACAGTTTAACATATCTGGTGGTTGCAGAGGCAACGCAACATCTGGATGTTGATCACGAGAAAGCTGTGAAATCTTAACAAGGTGATCCTGCAAGACAGTATCCTCAATTGATTGCCCCAGAGTACCAGCAGGACTTCCTTTATTTCCCCATGAAGGCCATACGACTTCAGGACCATCCAAGCAAAACTGAGCCCTGTTCAAAATTTTGTCCTCAGTAAACAAACTTCTCATCCCCCAATGTCTTGGGCTTGAGCTGCCAGATCTAACAATAGGGAATCCTCGTTTTCGTGACTCTCCCACAGGAGAAGGAGGCGGCGGCCTAGGGACTCGAGGAACACTAAGTACTACTGGCGATGGAGGTCTTCGTACAAGAGGAATATCCCTCCTGTTTGAAGGCACACATGGGCTCCTGTGATCATGACCCCCCTTAAATTCAGATCTTGATGGTCTTCGTGATATTGGAACAACTATTGGCCGCAGCATTGCATATGGCAATGTATCTCCCTTTATCACTTCGCTGCCACAAGATACACTCTTTGAAACTGAAATAGTTTTATCTTCAGGACTGTCTTGCATGGAAGATGGAGACTGCAACGACTCACTGTTCATGCCATTTGCTGTCATTGAATGACCAACAGACTGAGGGAGAGGATCTGGAGATTCATTTTGGGAACATACTGAAGTGGAAGGTGGTGAAGACACACTATTTGCATTATATGTACAAGGAATCCCAACAGGTATGTCATCAAGAACTTGACTAACATCTGCCTCATGCCAAGCCCATGCACTGTCATCTGAGCTAAGAGATGGTGGCCTAGAAAAACCAGTTCCGGCATGCTCTGCAGGACTCCAATACATAACTCCTCCTCCAAAATATTGATTAATATCTCTTCCGGAAAGTCCGCGGCCATCAGATTCTTCTTCAGAAAACCAGTAGCTTTCAGTATCATCCCCAACATCTGATTTGTTTCTTGGATCACTGTCACCAAAATATTTCCTATCTTTCTCATTGCAAATACTACCTCTTTGAATTAGTGGAGCATGAAACCCTGACCAAGCGGAAGATTGCATCTGCGGAGTATATAATGGATCATATCCTAAAGCATTGTTTTGATTCAATTTACCATAACCTCTGAAAACAGGAGGCCAATCAAAACTTAAGGGCACTGAAAGAGAGGATAGCACTTGATTGCATCCAGCTTCAACTGGCGGATTTCTCATCTGATGGTTGGGTGGAAGGAAAGGCTGTTCAAATTGAGCTGGCCATCTGTAACCAACATCAAGATGCAACCTATCTGTTGTAGCAGGGCGCTGTTGCATTTCCGGTGAAACAAAATGATGTGGTGCTACACTAGGCCACTCATATGATGTTCCACCCAGTGTGTTTCTGTTGTACACATAATATTCACCTCCAGTTTTCATTACCCCGCCATTGTCGCTTATAGCACTGTGAAACATATTAGTAGGAATAACAGGTGGCAATATTTTTTCAGTTGCCACTACAGAGTTACGATCAACAGTATCACTTCTGGAAGGCAAACAAGAAGATGGTTGGAGTGTAGATTCATTCTGGCCATTCTGCGATATGACCTGCTCATTCATACTAAAGCCATCAGATGTTTTCACACTCTGAGAACATTCTGTAGTCAACAACGAGCTGACTCTGGGAGAATGCAAGGTATCTTCCAGTTTTGTGTTTCCAATGCCTTTTACATCTGTTCCATTAAGTGCAATGGAAGAGTCACAGCAATTCACTGCTTTGGGAATGCAACTCTTGGACTGATGGACATATGATGGGAGATGAGGTGAGACATGTGTTGCTTCAACAGGTTTATTTGGAGCTTCTGTAGCAATATGAGGAGCATCTGTCTTCAATGTGCCAGATCCAGGGTTCTCAGTTTTCATCAGATTATGGAGCTTAGTTTTTCCTTTACGCTTATTTCTCTTTTTGCTGTTACATTGGTTCTTGCAGTCACCCAACCCAACAGTTTGCTCCACCTTTGGCGTTGGTGCAATTTCCTTGCAAAGATTATCTTCAGATGCATGTTCAATAGTAGTGCACACAACAGATGGACCCTGTTGATCTGGCAAAACCTTAGGATCATGACTATCTGAGCTACTGCATCCGATGTCCTTCATTTGCTTAGAAGATGTTATTAGCTTTTTCAAGCTACTGGACTTCTTCTTTCCTTTTCGAGAACCACCGCTGATCTTTTCAACATCTTTCTTTTTGGCAGCCTTTGGTGCTTCATCCCCAATGAGTTCAAGATTTATACTTTCCGTTGACACCACCATGAGAATTCCTCGTAATTTCATGAGTATATGGTCAGCAACAGTACCAGCTGACATTAATTTAGTGAAAAAGATTGCATCACCACTACGGTTAGAAATATTGCTCTTCAAGTACACTATCTCCTGAACCAGCATCAGCCTTTGCAATTCTTTCACGAAAATGGGATTCTTCTTACAAGACAGTGTGCTTGGAACATCAAGACAACAAGGTCGATTCCTTCTGAAAAAAGACTGCCGTGTGCTTTCATAATAAGTCTCTGCAACAAATGACTCTGGTTCACCTAAGCAGAAACTGAATTTCTCGCTAGAAGCAATATATGTTCCTTCAATGATCTCATTAGCCAGTGCTGTAGTGCCCTTCCCAAAGAATGCTCCCATGATCCTTGCTCTCACCCTCGGCTCCAGCCTCATCCACCAATCCACATACCCTTTCTCCCTCCAGAACGCATTTGCTGCCAATCCAGCTTTCTCCTTGACACCCTTCC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa06LNT0356900.1 | 6 | 27715965 | T | C |
| Osa06LNT0356900.1 | 6 | 27709066 | C | A |
| Osa06LNT0356900.1 | 6 | 27709107 | T | C |
| Osa06LNT0356900.1 | 6 | 27709407 | T | G |
| Osa06LNT0356900.1 | 6 | 27709607 | C | T |
| Osa06LNT0356900.1 | 6 | 27710559 | C | T |
| Osa06LNT0356900.1 | 6 | 27711493 | A | T |
| Osa06LNT0356900.1 | 6 | 27711612 | G | A |
| Osa06LNT0356900.1 | 6 | 27711663 | C | T |
| Osa06LNT0356900.1 | 6 | 27712115 | A | G |
| Osa06LNT0356900.1 | 6 | 27715091 | C | G |
| Osa06LNT0356900.1 | 6 | 27715593 | G | A |
| Osa06LNT0356900.1 | 6 | 27717544 | C | A |
| Osa06LNT0356900.1 | 6 | 27717724 | A | G |
| Osa06LNT0356900.1 | 6 | 27718237 | T | G |
| Osa06LNT0356900.1 | 6 | 27712123 | A | C |
| Osa06LNT0356900.1 | 6 | 27713153 | C | T |
| Osa06LNT0356900.1 | 6 | 27714089 | C | T |
| Osa06LNT0356900.1 | 6 | 27714846 | T | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa06LNT0356900.1 | osa-miR5532 | Translation | 3.5 | 19.049 | 1 | 22 |
| Osa06LNT0356900.1 | osa-miR5534b | Cleavage | 4.5 | 13.799 | 1 | 21 |
| Osa06LNT0356900.1 | osa-miR5534b | Translation | 5.0 | 14.288 | 1 | 21 |
| Osa06LNT0356900.1 | osa-miR5827 | Translation | 3.0 | 14.197 | 1 | 21 |
| Osa06LNT0356900.1 | osa-miR1440b | Translation | 5.0 | 14.736 | 1 | 21 |
| Osa06LNT0356900.1 | osa-miR1440b | Translation | 5.0 | 12.193 | 1 | 21 |
| Osa06LNT0356900.1 | osa-miR1437b-5p | Translation | 4.5 | 13.261 | 1 | 21 |
| Osa06LNT0356900.1 | osa-miR171a | Cleavage | 5.0 | 17.159 | 1 | 21 |
| Osa06LNT0356900.1 | osa-miR396a-5p | Cleavage | 5.0 | 19.487 | 1 | 21 |
| Osa06LNT0356900.1 | osa-miR396c-5p | Cleavage | 5.0 | 19.487 | 1 | 21 |
| Osa06LNT0356900.1 | osa-miR396c-3p | Cleavage | 4.5 | 10.363 | 1 | 21 |
| Osa06LNT0356900.1 | osa-miR319a-3p | Translation | 5.0 | 8.084 | 1 | 21 |
| Osa06LNT0356900.1 | osa-miR1429-3p | Translation | 4.5 | 17.975 | 1 | 21 |
| Osa06LNT0356900.1 | osa-miR1428b | Cleavage | 3.5 | 12.317 | 1 | 21 |
| Osa06LNT0356900.1 | osa-miR1428c | Cleavage | 3.5 | 12.317 | 1 | 21 |
| Osa06LNT0356900.1 | osa-miR1428d | Cleavage | 3.5 | 12.317 | 1 | 21 |
| Osa06LNT0356900.1 | osa-miR1428e-3p | Cleavage | 3.5 | 12.317 | 1 | 21 |
| Osa06LNT0356900.1 | osa-miR2097-5p | Translation | 5.0 | 15.421 | 1 | 22 |
| Osa06LNT0356900.1 | osa-miR1863c | Translation | 4.0 | 10.046 | 1 | 24 |
| Osa06LNT0356900.1 | osa-miR2879 | Cleavage | 4.0 | 23.731 | 1 | 24 |
| Osa06LNT0356900.1 | osa-miR5080 | Cleavage | 5.0 | 16.342 | 1 | 21 |
| Osa06LNT0356900.1 | osa-miR5488 | Translation | 4.0 | 16.033 | 1 | 21 |
| Osa06LNT0356900.1 | osa-miR1440b | Cleavage | 4.5 | 13.011 | 1 | 21 |
| Osa06LNT0356900.1 | osa-miR396b-5p | Cleavage | 5.0 | 19.487 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa06LNT0356900.1 | 6 | qLDLJ-6-1,2,3 | Physiological trait | Source activity | RM217 | RM3 |
| Osa06LNT0356900.1 | 6 | ppl6.1 | Resistance or Tolerance | Drought tolerance | RM3 | CDO78 |
| Osa06LNT0356900.1 | 6 | nan | Morphological trait | Culm/leaf | RG653 | RZ140 |
| Osa06LNT0356900.1 | 6 | amy6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0356900.1 | 6 | asv6-1 | Physiological trait | Eating quality | RM3 | RM217 |
| Osa06LNT0356900.1 | 6 | qREP-6 | Resistance or Tolerance | Other soil stress tolerance | nan | nan |
| Osa06LNT0356900.1 | 6 | tgw6.1 | Physiological trait | Source activity | RG264 | RM3 |
| Osa06LNT0356900.1 | 6 | nan | Morphological trait | Root | RM4447 | RM5509 |
| Osa06LNT0356900.1 | 6 | ph6 | Morphological trait | Dwarf | RZ667 | RG653 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)