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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0357200.1

AATATACAATACGGTATTTATATTTCACACAGTAAGGTTTTGTATTCAAATACAAGGCATATCGGACATACACCACACAATAATAATACACAAGAAAATAAAGTTCTATGATGGACCCTCTGACCCTGCACACCACACACAGACTTTTTTGAATAGTTATATGGGACATACACAACATAACTACTAGTATAATACCACAGTACAGCTACAGAGCCTACAGGTACAGACATTGCGGGGATAACTGACAACTCACAAACAGTTTGACACATGTTTTTTTTTTTTGGTGGGACATACTACTATACAAGATGTTTAGCTAGCTTCTTTCTTTTTTTTTTTTGATGTGGGCCATGAAAATGTTGCAAGGACATCTTGAACTTGGACGGTGCGAGCATAGCAAGGTAAACAAACCGGCACCCAAGAAGCAGGAGCAAGAATGCCAGGAAGGAGATTTCTGGTCCACTGATGAAGCCAGCCCATACGGCCAACACTGGTGCGGCCATCAGGATGTAGCCGGACCAGGCCACCTCCGCACGGTTCACCAGTTCAACACATGCTGGGCTTGTTGGTGTTGCTGCTCCCATGCTGTGGTTGTCTCCATGATATGCTGGAAACATTATATGGAGAAGACCGAAGAGCTTGAAGCAGCCGATGAGCCAGATCCCCAACAGAAGTAGCAGAGACCATTGCAAAGGTTCTGCCTGCCAAGCCACAGCTACCATTGGGGAAGCACAATACAGCAAGATCACAAATGCCGACGTGTCGACCTGCTTCACCATCTTGAGGGGGCGGAAGGCGGGCGGAACGAGAGGCGGATCGGCGAGGCGAGGCGACGAGGCTGCGCGCAAAGGGAATGGAATGGAAGGGAGT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.697899
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0357200.1 6 27929749 C T
Osa06LNT0357200.1 6 27929968 C G
Osa06LNT0357200.1 6 27930761 A G
Osa06LNT0357200.1 6 27931097 C G
Osa06LNT0357200.1 6 27931116 T C
Osa06LNT0357200.1 6 27931498 A G
Osa06LNT0357200.1 6 27930877 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0357200.1 osa-miR1427 Cleavage 5.0 22.272 1 21
Osa06LNT0357200.1 osa-miR5804 Translation 5.0 10.184 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0357200.1 6 ppl6.1 Resistance or Tolerance Drought tolerance RM3 CDO78
Osa06LNT0357200.1 6 nan Morphological trait Culm/leaf RG653 RZ140
Osa06LNT0357200.1 6 amy6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0357200.1 6 asv6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0357200.1 6 qREP-6 Resistance or Tolerance Other soil stress tolerance nan nan
Osa06LNT0357200.1 6 tgw6.1 Physiological trait Source activity RG264 RM3
Osa06LNT0357200.1 6 nan Morphological trait Root RM4447 RM5509
Osa06LNT0357200.1 6 ph6 Morphological trait Dwarf RZ667 RG653
Osa06LNT0357200.1 6 qLDLJ-6-1,2,3 Physiological trait Source activity RM217 RM3
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus