>Osa06LNT0357900.1

GTAGGGAAACATATCGAAATCGTGCTCTCATGATAGGAGAGCCGATCCATTTTCCTCGTATATTATGTTTCAAGCTTCCACTTATATGGCTACAGTGCTACAGTCTGGTGATAATTGCAATCAGTAATACTAATGCACAGATTTTGCTGCAACCCGTAACTAAGAACACTAGAGCTGCAGAGTGGGGGTGATCCTGAGGAATACCGATCCATAGATTCAGATCCTAATTTTGATCCACGCTACACAAAACTTGGACAATGAAAAAGAATGCAATGACCAAAGTGTACAAAAATTTCCATGTGGAACACCACGCCTGTGGCGAAAATCAGCCTTATCTCCAGTTCTCCACCTTGTGAATGCTAACAGTTGCTATTTTGTTCTAGTGATGACTCTCTCTGTGATGTCAATAAGAGCACGCCTTGATGTCAGAACATCTTCATCATCGCTGTCTGGGAGAGCTTCTATGGCTTTGATTGCACGGTTAGCATGTTCTCTTGCAAGCTCTTTCGTCTTTTCAATCCCGCGGCTCTTCTGTAGGTAGTCAAGAGCAAGCTCAACATTTGCAGGATTGTCAAAACCCCTGTCAACAACTTCATGTAGTTGTGGGAATTCTTCCATCGCATAAAGCATAGGTGCGGTAATGATTCCATGACGGATATCAGTTAATGAACCCTTCCCAAGGGATGCAGAAGTGCCTGTGAAATCAAGAACATCGTCGATCAACTGGAAGGCTAAACCCAGGTTTCGACCATATTCATATGCGAGCATTGACACATCAGCAGTGTGCCCTGCAAGAATAGCGACAGCCTTGCAGCTATTTGATATCAATGATGCTGTTTTGTAGTACGTCTTCTGCAAGTAGTAATCCATACTTCGCCTTTGCTCTCTACTTGTGGAGATTTGCATGGTTTCACCAGTAACTAGATGTTCTACAGCAGTAGCCATTAGAGATACCACCTCTGTGTTCCCAAGCGCTGCAAGTGCCACACATGCTCTAGACAGGAGGAAGTCACCAGCCAGAACAGAAAGCTGAAAGCATAAGAAATTAATAATTTGTGGAATACTGGTGTAAAGATAATTTAAATAGTACCATCTCCGTGAGTAATAAGTAATTGATGAACAATGATGCCCCCAGAAACTTTAAAAACATCTTCACGCTATCCTTTTGTGTGTGTATAAGGTGATGTGTGTGTTCTTGATGAGAGTATCTAATACTCACTTAGTACACTGCGTATGCAGTTCGTGTGACTTACAATACCTTGTTCCCCATAATGCAATTCAACGAACTGACGCCACGCCTAGTGTCAGCATCATCCAGTACATCATCATGTAGAAGGCTTGCAACATGAATCATTTCAGTTATCTCGGCAATATTTTGCTGTCTCGTGCGGAGCTTATTTGCCAGTATAGTTAAAACTCCCACTTCTGTTGAATCTGATAAGGGGAATTTCAGAGCTGATGCCATCAACAATAATACCGTGGGTCTGAATCTTTTACCCTCAGCTCCCACCTTAAAAAAATACTCAGCAGCTGATGCCAGTTTGGGGACCTCAGCAGCTACCATGGATCGTAGCCTATTTGCAAGAAGTGACAACTCATCAGCAACCAACTCAAATGGATCCTGCTGTTCCTCAGACCTTGATAACCCATCCTGGCGAACCTGGTACTGAGCATCATGTAACCATCGCGAGCTCACGAAAGTAGCTCCTCTGCAACCCACCACCTTGCTCCGAATCTGGTAGTGCGGCGGCGACGGCGGTGGAGGGTGCCTCCCGAGGAGGGCAGCCGCCGAGGAGAAGAGCCGCTGCGCCTGGGCGGTGGCGCCGTCCCCACCGCCGCTCGTCGCGCCCAGCGCGGCGACGCGCCGCGCGAGAGCCCACCGCCACGACATGGCTCCCGAGATCGGGGGGAGGGAGGAGGGAGGAGGCGGAGTTGAACTTGGAGAAAAAGTCTGGGAAGAAAGAAAAAAAC

Explanation	CPC Score
noncoding	-1.02338

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0357900.1	6	28192229	C	A
Osa06LNT0357900.1	6	28192955	C	T
Osa06LNT0357900.1	6	28193345	T	C
Osa06LNT0357900.1	6	28193708	T	C
Osa06LNT0357900.1	6	28195023	A	C
Osa06LNT0357900.1	6	28195081	G	C
Osa06LNT0357900.1	6	28195860	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0357900.1	osa-miR319a-3p	Translation	4.0	16.627	1	21
Osa06LNT0357900.1	osa-miR2864.2	Cleavage	4.5	12.104	1	21
Osa06LNT0357900.1	osa-miR3981-3p	Cleavage	4.0	17.775	1	21
Osa06LNT0357900.1	osa-miR5500	Cleavage	5.0	22.372	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0357900.1	6	ph6	Morphological trait	Dwarf	RZ667	RG653
Osa06LNT0357900.1	6	nan	Morphological trait	Culm/leaf	RG653	RZ140
Osa06LNT0357900.1	6	qLVG6	Resistance or Tolerance	Cold tolerance	RM340	RM30
Osa06LNT0357900.1	6	qREP-6	Resistance or Tolerance	Other soil stress tolerance	nan	nan
Osa06LNT0357900.1	6	nan	Morphological trait	Root	RM4447	RM5509

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus