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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0358300.2

CGACGATTAGGGGCAATTGTTATTAGTCAAACATTTACCGAGTTATTTTTTTCTTGTAAAAGAACACCCTATAAACTGTGACAAGGAGTAATAAGTTTCCGGGCAGGAGTAGAGAATGAAGAGTACATACGATACATGAGCTGATACTGCTAGCAGACAGGAGTACATTTTTTTCATACTACACATCATCCAGATCCAGTTATTGCAGGAAGGCATCTCAACACCACGAACACAGCATTCCATGCGAGATAGGACTGGCACGATTCAGGAAGGTCGTATACATCAGGAGGATTCAGGGAGGTCGTCACATCAGGAAGAAGGGCGAGCCGATTCCGAATAAGGGAGAGTTGCAGACTCCACGCATGTTGAAGCCTCGGAGACGCTCCAGGTTCATCACGTCGGAGTGATCCACGAACAGATTCACCCGTGGCCCGTATCTTCTGACGAACCACTCGGAGGTGTTGGGGTTGGAAGCCTCGAACATGGTCTTCTCGAGCCCGAGCCGGCCTACAATCTTGGCGACGATGTCTGCCCGTAGAGAGTCAGCGCGCTGGCAAATGTCGTCGGCATCGATCATGATCATGTCTGCCCCTGCTTCCAAGCACCTCTCGGCCCTCCTTATCAACAGGTCAACATCCTCGACTCTTTCTGAATTCTGCTTCACTGGAACTATGTATGCCCCAAATGCCCTATCTCCAGATGGAGGAATATCAGAACTGTCAAACTTCACTGAAAACAGGGGCTTTGCTTGCAAACCACTAGTCTTGATGAGGCGGACTAATCTCAGGAGAGCTTCTTCCGGGAGCTTGAGAGATCCAGCATTCAGCTCGATGGTGTCAAATCCTAATGCCTTGCACTCCTCGACATATTGCTTGAAAAAAGAAGGTCCTTGACGCAGAAGATGCTCTGCCCAATCTCCTGTACTCACATATATGTCATGCTTGTGTGCTAAATCAGTAATCTCTCTAACCAGTTCTTTTCCCATCAAACTATGAGATCCACCAGTAAACTTCAAACCATCAACAAAAGGACCTAGAGAATCCAATATTTCTGATAAAACTAGCTGTAGCTGCTACGCATTCTGACATCCACAAATGTACCACTTGATCTACAAACTGACACTGATCGTTGATCGCACAGACTGAAGATTCCAATATGGTGGCCCTGTTTAGGAATTAACAAATAAACAATCAAGTCACGAAGAATTATGCAGCAGATAGGGCTTCATTTCAAACACGATTCGGTGGGAATCAGAACGCGATTAAAAGTTAAAACTACACCAAATTCCACAACCCAGCAGCGATTCGTAGAAGCATGAAACAAAAATGGGGATGGATTAGGCGGGGGGCTCTCCGAGAACCTGGAGCGCGTGGTGGGCGGGGCGGAAGGCGTAGAAGGGGCTCCTCATCTCCGTCACCCCGTACCGCCGCGGCTTCTCCGGCCGGTCGTCGTCCCCGTCGCCGAATCCGCACCCGCGCAGCGACAGCGCCACCGCATCCTCTCTCCACCGCCGCATCGCCATCTTCTCCGGCGAACTTAGCTCTCGCTCTCCCTCTCGTTGTCGCTGCCACCTGATCGAGCGATAAAAAGCC

Coding Potentia
Explanation CPC Score
noncoding -1.13026
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0358300.2 6 28463958 A G
Osa06LNT0358300.2 6 28466054 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0358300.2 osa-miR156j-3p Translation 4.0 17.036 1 22
Osa06LNT0358300.2 osa-miR166h-5p Translation 5.0 22.862 1 21
Osa06LNT0358300.2 osa-miR419 Cleavage 4.5 23.487 1 21
Osa06LNT0358300.2 osa-miR1425-3p Cleavage 5.0 15.887 1 21
Osa06LNT0358300.2 osa-miR2118f Translation 5.0 20.029 1 22
Osa06LNT0358300.2 osa-miR2118j Translation 5.0 20.029 1 22
Osa06LNT0358300.2 osa-miR2118m Translation 5.0 20.029 1 22
Osa06LNT0358300.2 osa-miR5152-5p Cleavage 4.0 18.054 1 21
Osa06LNT0358300.2 osa-miR5506 Cleavage 4.0 23.657 1 21
Osa06LNT0358300.2 osa-miR5506 Translation 4.5 8.95 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0358300.2 6 nan Morphological trait Culm/leaf RG653 RZ140
Osa06LNT0358300.2 6 qLVG6 Resistance or Tolerance Cold tolerance RM340 RM30
Osa06LNT0358300.2 6 qREP-6 Resistance or Tolerance Other soil stress tolerance nan nan
Osa06LNT0358300.2 6 nan Morphological trait Root RM4447 RM5509
Osa06LNT0358300.2 6 ph6 Morphological trait Dwarf RZ667 RG653
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus