>Osa06LNT0358600.1

TTGAGCGCAAACAAGTGGAATTTTCACCATGAGTTATGTTATATTATCATCATACGGGACCAGATGTATCATAGCTAGCAGAAGAGAGCCCGAAACATCTTCGGATCAAGCAACCAACTGCAACATTGCTTAATGCATAACATGCTTAAAGGTAGTTTTGTTACATCCGCACATAGTGAAGTAACACAGACAGGTAGCTGGTTTATCATTTTTCAGGCATTACAGATTGGTATCAGCCTCATTTCTTCCCGCTCTTCTTCAGACCAGAGCCTCCCAGTGCACCCTTCTGTCCTGCCTTGGCCTTAAGCTCCTTCAGTGCCTTTTCCTCATCTTTCTTCTTCTGCAGATACGCGAGATCACTCTCGTCGTACTCCTTCTTCTCGGCCTTGGGCGCCTTGAGGGGCTTGGCCTTCCCTCCTTGCTTCGACATGGCTGACCGGATCGGCGAGGGCGAGTCGAGAAACCCTAGCTCGCGCGCCGCGACGACGAGGAGGAGATGGAAGAAGGGAAAGGCGAGGAAATGGGAGACGCGAGAGGCAGAGGCGTATATAGCTAGCCTAGCCTAGTGTAGTGGTTGGTCGCGGCTGCG

Explanation	CPC Score
noncoding (weak)	-0.948297

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0358600.1	6	28639599	G	A
Osa06LNT0358600.1	6	28640369	A	T
Osa06LNT0358600.1	6	28641243	A	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0358600.1	6	ph6	Morphological trait	Dwarf	RZ667	RG653
Osa06LNT0358600.1	6	nan	Morphological trait	Culm/leaf	RG653	RZ140
Osa06LNT0358600.1	6	qLVG6	Resistance or Tolerance	Cold tolerance	RM340	RM30
Osa06LNT0358600.1	6	qREP-6	Resistance or Tolerance	Other soil stress tolerance	nan	nan
Osa06LNT0358600.1	6	nan	Morphological trait	Root	RM4447	RM5509

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus