>Osa06LNT0359600.1

CTAGAATGGCACACATATCATTACATCAAGTTTAGTAGAAAGCTACATCATATGATTGAGGACCAACACTTAACCTGCGATTGCAAGTTGCCCTCAAACAAGATCAGGGCAACGCAAGCAACGAAGGAGATGGCAAAAAACACATCCCCCGACAAGTTACAATGTTCAGCTACAGCAGCATCCACAGATGACACTTATGACAGATGCATCATCTGCTTGGCACAAGACAACCATAAGGTCGAAGAAACTTGCAAGAGCAATGAAGAACGGTGTGTATGGAAGAGAGCTATGATTGATATGTTAGGAGGCTTGATCATTCGTCGGTCTCTCTGGCAGGTGATTCTCCTGCTCCAAGAAACGGACGACGAGGCAGGTGATGTTGTCTGCGCTTCCCCTCTGTGAGGCCTCCTGGAGGAGCTTCTTTGCAGCCTGCTCTGAATCCAGAATTGGCTTCACCATGGCCACAGCTTCCTCGTTGGTCACCACGTCCCAGAGGCCATCACTAGCAAGGATGAGGAACTCGAGAGAGCTGTCGACCACCTCCTCCTTGATCTCTGGATCAGCAACCACATATTGCTTCAGGAGTTTGTCACCAAATGCTCGAGAGACAGCAAGAACACCACCCACGCGCCATGTTCCAGCCCACATCACAAAACCACCAGCATCCTCTATCCTCTGCCTCTCGTCTGACTGATCAGGCTTGTGGTCTCTTGACACAGCTATAGCATCTCCTCCTCTACAAATGACAGCCCTAGAATCTCCAACATTTGCAACGAGCAGACGGTCGCCTACGAGAATTGCAGTGGAGGCAGTCGACCCTGCATCTCGATTGTGGCTGGTTTCAGCTTTCAGAAGTTCAGAGTCCGTGCTAGTGTAAGTTTCAGCAATTGCAGACTTGGTATCACTGAATAACTTTGGGTGCTTGATTAAATTGGTGAAGAGGTTCTGCTTGACGAATTCTGCTGCTCGAGCTCCACCATGACCATCAAAGACACCAAACAGTCCAACGGTCTCTCCATCGACACCATCAATTCTGGTGTCATAGAAGTCCTCCATGGAGGATCTTTTTCCAGGAGAGCTCGCATAACCATAGCTAAATTTACCATTTGCACTGAACCCGCCGCCACTGCCAGGCGAGCCAGCGGCCTCTCCGGCGAGCCCCATCAAGCGCACCTCGCCGTCGTCCTCCTCCTCCTCCGCTCCCTCACGCATGCACGCGAACGACGGAGGAGGAAGAAGAAGAGGATGGCGATCGATCCGGGGAACGCGGAGCTCGCTCGTGTCCCCCCTCCCCCCCTATAATGGAGGACCGGACGCGCGCGCGCGCCGGGCGTCACGTGGCGCCACGCCGTGCGCGCCACGCCCGCGCCCATGGTTGGTTTTGGTCTTGTGGTTCTCCTCCTCCTCCTCCTGCTGCTGCTGAGCACGGACGAACACCTCGTCGTGGGAGACGAGGAAATGGGAGGTGACCTCCACGTGGCGCGAGGGCGACCCGACCGGAGCTCGCGCGGGGCGACACGTCGTCGCCGTGGACGACGGTTTGGCGCCTTCTTTCGCGGTACACGTCATGGTGGCGAGATGCATCGAACAAACTCCGTACTATTCAACTGTTTGATGCTTTCC

Explanation	CPC Score
noncoding (weak)	-0.916597

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0359600.1	6	29208814	G	T
Osa06LNT0359600.1	6	29208577	C	T
Osa06LNT0359600.1	6	29208621	C	T
Osa06LNT0359600.1	6	29208916	A	G
Osa06LNT0359600.1	6	29209001	A	G
Osa06LNT0359600.1	6	29209566	G	C
Osa06LNT0359600.1	6	29209948	T	C
Osa06LNT0359600.1	6	29210435	G	A
Osa06LNT0359600.1	6	29210748	G	A
Osa06LNT0359600.1	6	29210976	G	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0359600.1	osa-miR5529	Cleavage	4.5	13.922	1	21
Osa06LNT0359600.1	osa-miR5533	Translation	5.0	21.118	1	21
Osa06LNT0359600.1	osa-miR1847.1	Cleavage	5.0	19.287	1	21
Osa06LNT0359600.1	osa-miR1846e	Cleavage	3.5	22.414	1	20
Osa06LNT0359600.1	osa-miR2098-3p	Cleavage	5.0	18.464	1	20
Osa06LNT0359600.1	osa-miR5150-5p	Translation	3.5	20.679	1	24
Osa06LNT0359600.1	osa-miR5150-3p	Translation	5.0	16.816	1	24
Osa06LNT0359600.1	osa-miR5830	Cleavage	3.5	11.034	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0359600.1	6	qREP-6	Resistance or Tolerance	Other soil stress tolerance	nan	nan
Osa06LNT0359600.1	6	nan	Morphological trait	Culm/leaf	RG653	RZ140
Osa06LNT0359600.1	6	ph6	Morphological trait	Dwarf	RZ667	RG653
Osa06LNT0359600.1	6	qLVG6	Resistance or Tolerance	Cold tolerance	RM340	RM30

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus