© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0033100.2
CACCACTCTAAACATCTTATGTACATTCCCTCTGTTCTGGTAGCCCAACAAACACATATGCACACATCACCAGGGAAGCCTGGAAAGTGGGGGAAAAAAGGTCTCGCACCTCTCATACAACAAGCACACGCCTCAGCGTAATAGCAGTAACACACATATTAAGCCTCGGTGGCAAATATACTGGTCTAATCTAATAACCCGCTGGTCACTGGCTAGTGTTAGGAGTCGTCTGCCTGCTATCCCACTGAGCATGCACCGTGTCGGGAGATAATGGCGGGTCAGGTCCCTTCTTGTCTTTGCCTCCATCTTTCTCCATCACGCATAGGTCCTGTACCCCCTTGAGCCCCTCGAGCACCTCCTTGATCGGCGGCCTCATCTCGCCGTTCTGCTGCAGGCACCGGAAAGCCAGCTCGGCGACCATGGTCATCATCTTCTTCGTCGCCGGGTCGGACTCGTAGCCGAGCTCGAGGTCCACGAGCTCCTCGAGCTGGCTCTTCTGGATCCTGTTGATGGCCATGCCGGCCAGGTTGATCTCGTTCCGCTGCCGGGTGATGTCCACCGCCGGCTTCGACGAGATGAGCTCCACCAGGACAACGCCGAAGCTGTACACATCGCTCTTGTCGGTAAGCTGGTAGCATTGGTGATACTCCGGATCCACGTATCCTGGGGTGCCCTGGGGAGCGGTGGAGACGTGCGTGACGTCGAGGGGGAAGAGGCGGGAGAGGCCAAAGTCAGCGACCTTGACGTGGAAGTCGGCGTCGAGGAGGATGTTGGTGGTCTTGACGTCGCGGTGCACGATGGGTGGCTCGATGGCGTGGAGGTACGTGAGCGCGGCGGCCGACTCGACGGCGATGTTGAGGCGGAGCGGCCACGAGAGCGCGCGCTCCTGCGCGCGGTGGCCGTGCAGGTGGTCGGCCACCGTGCCGTTGGCCACGAACTCGTACACCAGGAGCAGCTCCCTGCTCTGGCTCGACGTGCACCCGTAGAACATCACCAGGTTCGGGTGCCGCAGCCGCGACAGGATCGCCGCCTCGTTCACGAACTGCTCCACCCGCCGGTAGCTGTTGTTGTACAGCCGCTTCACCGCCACCACGCGCCCGTCTCGAAGTATCCCTTTGTAGACGGTGCCGAAGCCGCCATCACCGAGCTCTCTGTTCTCGTTGAAGGAATCGGTGGCCTCCTCGAGCTCCTCGTAGCTGAAGAGGTGAGTCTGCAGGTCCTTGACACTGCCGGACTCCATGTCGCCGCCCATGGAGCGAGGTGTCCCGCCGGAGCCGCTGTACTTGAGGAGCTTGGAAGACGAGTTCACCTTCTTGTGCTTTCTCTTGCGAACGAAGAAGACGGTGGCTATTAATCCAAGAGCGAACACCGCAGATAATCCCCCGCCAACCACACCTGCTATAATTTTTGTCTTCAAGTTCGATCCGGTGGTTAAGTCGCTGGAACCGCACCTGAGAGAGCGCACTCGTCCGTTTAGGCACAAGCAGCCGATGAATTCCCCGTCTTGGCTGAAACCGCACCGTCCTTTGGACTCCTCGCACTGCGTACAATTGGGGGGCCTCCTGCTATCGTTCACTGACAACAGGAATCCCTGACGAAGAACCTGGCCGTATCCACCCTTCCTCCATGCGTCACCTTTTGGGTCCATCTGTTGATATTTGACCACAGGAACTTCGAAGGTTTTGCAAAACTGCGACCAGTTCCCAGGCGGCACTTGATCCTTCGGAAGCACGTAGGACGGTCCAATGAGACCGATAAAGCTGCAGGTGATCGGGTCGATGTTTTCCGGTGGGAGGAAGAGATTCGGGAAGGAGCAGCCGAGAAAGAAGACGAGGTAATCCAACGACATGCCAGCAGGGAAGAACAGCCATGAGCCCTGTGCGAAGGTCACGTTGTGATCGACTCTTGGGCAGCCGCTGCTGTCGTCGACGACCTCCTTATCGACCAGGGACACGTTGGTGATGCTCCCAACGTTGATGTAGTTAACCTTGTACTTCTCGGCGCCGTTGAGTTGCAGGATGGGCTTGCCGTCGTCACAATCGATCGCCAGGCCGGGGTATCCGCAGTATGAGTTGCTGGACCCGTTGATATATCCCGTCTTATCAGAAAAGTAGAACGGGTATCTGATACTGACATCCCCGCAGGTGGTTGTTTCCTGCAGGCACATGGAGGTGTCGTAGGTGTCATTGGAAGCGCCATGGGAAGCGGCAACCAAGACAAGGAGGAGCGGCAGCAGCCGCCGCCGCCGCCGGCATAGCAGGAGAGGCATGGCTAACGAACTCAGAGAAGGCGTTTTTTGTTTTTGCTTGCCTGCAGATTAATTTGGT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0033100.2 | 1 | 28487192 | T | G |
| Osa01LNT0033100.2 | 1 | 28483180 | A | G |
| Osa01LNT0033100.2 | 1 | 28483613 | T | C |
| Osa01LNT0033100.2 | 1 | 28483806 | T | G |
| Osa01LNT0033100.2 | 1 | 28484846 | A | G |
| Osa01LNT0033100.2 | 1 | 28485029 | A | T |
| Osa01LNT0033100.2 | 1 | 28485535 | A | T |
| Osa01LNT0033100.2 | 1 | 28485641 | A | C |
| Osa01LNT0033100.2 | 1 | 28485841 | C | A |
| Osa01LNT0033100.2 | 1 | 28486462 | T | C |
| Osa01LNT0033100.2 | 1 | 28486492 | C | T |
| Osa01LNT0033100.2 | 1 | 28486777 | G | C |
| Osa01LNT0033100.2 | 1 | 28486880 | T | C |
| Osa01LNT0033100.2 | 1 | 28487029 | T | A |
| Osa01LNT0033100.2 | 1 | 28487469 | T | C |
| Osa01LNT0033100.2 | 1 | 28488187 | C | T |
| Osa01LNT0033100.2 | 1 | 28488635 | A | G |
| Osa01LNT0033100.2 | 1 | 28488682 | G | A |
| Osa01LNT0033100.2 | 1 | 28488759 | T | C |
| Osa01LNT0033100.2 | 1 | 28488768 | C | T |
| Osa01LNT0033100.2 | 1 | 28488771 | A | G |
| Osa01LNT0033100.2 | 1 | 28488808 | G | A |
| Osa01LNT0033100.2 | 1 | 28488966 | G | A |
| Osa01LNT0033100.2 | 1 | 28489175 | A | G |
| Osa01LNT0033100.2 | 1 | 28489612 | T | C |
| Osa01LNT0033100.2 | 1 | 28489633 | A | C |
| Osa01LNT0033100.2 | 1 | 28489662 | T | C |
| Osa01LNT0033100.2 | 1 | 28489695 | T | C |
| Osa01LNT0033100.2 | 1 | 28489960 | T | C |
| Osa01LNT0033100.2 | 1 | 28489989 | A | G |
| Osa01LNT0033100.2 | 1 | 28489997 | A | G |
| Osa01LNT0033100.2 | 1 | 28490471 | T | C |
| Osa01LNT0033100.2 | 1 | 28490666 | A | G |
| Osa01LNT0033100.2 | 1 | 28490782 | T | A |
| Osa01LNT0033100.2 | 1 | 28490823 | G | T |
| Osa01LNT0033100.2 | 1 | 28490870 | A | G |
| Osa01LNT0033100.2 | 1 | 28490879 | A | G |
| Osa01LNT0033100.2 | 1 | 28491041 | A | G |
| Osa01LNT0033100.2 | 1 | 28491863 | G | A |
| Osa01LNT0033100.2 | 1 | 28492019 | T | C |
| Osa01LNT0033100.2 | 1 | 28492028 | C | G |
| Osa01LNT0033100.2 | 1 | 28492156 | G | A |
| Osa01LNT0033100.2 | 1 | 28492221 | T | C |
| Osa01LNT0033100.2 | 1 | 28492594 | A | G |
| Osa01LNT0033100.2 | 1 | 28492801 | A | G |
| Osa01LNT0033100.2 | 1 | 28487091 | A | C |
| Osa01LNT0033100.2 | 1 | 28489931 | A | C |
| Osa01LNT0033100.2 | 1 | 28486852 | T | C |
| Osa01LNT0033100.2 | 1 | 28491916 | C | A |
| Osa01LNT0033100.2 | 1 | 28486690 | A | G |
| Osa01LNT0033100.2 | 1 | 28484996 | C | T |
| Osa01LNT0033100.2 | 1 | 28484917 | T | A |
| Osa01LNT0033100.2 | 1 | 28484853 | G | A |
| Osa01LNT0033100.2 | 1 | 28488254 | G | C |
| Osa01LNT0033100.2 | 1 | 28488608 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0033100.2 | osa-miR5806 | Cleavage | 5.0 | 19.903 | 1 | 21 |
| Osa01LNT0033100.2 | osa-miR5817 | Cleavage | 3.0 | 21.994 | 1 | 24 |
| Osa01LNT0033100.2 | osa-miR6250 | Cleavage | 3.5 | 20.131 | 1 | 22 |
| Osa01LNT0033100.2 | osa-miR2926 | Cleavage | 4.0 | 23.427 | 1 | 20 |
| Osa01LNT0033100.2 | osa-miR5161 | Cleavage | 5.0 | 10.357 | 1 | 20 |
| Osa01LNT0033100.2 | osa-miR5501 | Cleavage | 4.5 | 19.606 | 1 | 21 |
| Osa01LNT0033100.2 | osa-miR5792 | Cleavage | 5.0 | 21.968 | 1 | 24 |
| Osa01LNT0033100.2 | osa-miR2091-5p | Cleavage | 4.0 | 22.694 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0033100.2 | 1 | yld1.1 | Physiological trait | Source activity | RM5 | RG462 |
| Osa01LNT0033100.2 | 1 | nan | Physiological trait | Source activity | RG532 | RM472 |
| Osa01LNT0033100.2 | 1 | nan | Morphological trait | Root | RM3475 | RM3494 |
| Osa01LNT0033100.2 | 1 | QPh1b | Resistance or Tolerance | Submergency tolerance | RZ527 | RZ154 |
| Osa01LNT0033100.2 | 1 | rfw1b | Resistance or Tolerance | Drought tolerance | C813 | C955 |
| Osa01LNT0033100.2 | 1 | nan | Morphological trait | Seed | CDO118 | CDO455 |
| Osa01LNT0033100.2 | 1 | brt1d | Resistance or Tolerance | Drought tolerance | C742 | C904 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)