>Osa06LNT0360400.2

CGCATGCAATGTTTTCTTGTCTAATTGATCAATAACTGAGCCACACACTCTTTTACAAGACACACAGACATCTTCAAGTGCGCAGATGAAACGTCTTCCAGAACACCCCTCCATTCCAGTACTGCGAGCAACTCTATTGGGAGCTGAATTTACTGACTACTGAATTACAGAAAGGCAGGAGACATCTCATGACGATTTTCTTCGGTCAGAACAGTTGTCTTCACAATATTCTTCCAATTCACAACAAGCTCTCTCCTCAGATTGACCCTTGTCCAAACAGAGCTTCATAAGATATCAAGTTATGTGTTACTAAAGCATAATGAGCTAGACCTTAAGATACAATACAACAATGAGTCAATGACAGACGTCTGAGGCAAGATCTGTACATACTGGCGGGTAGCTACTCAACGAAGGGGTACATTTGGCATCTTAATTGGAACACTACACTAACTGACTAGCTGCTAGCTAATCCGGGAGCAGCAGATTTCTCTGGGCTCAATCCTTGCATTGAATATATACATAGCTGCCATCACTGGTCGCCAACATAATCAGAAAGGACTAACTCTTCCAGCAAGCATAAGCATGAATTCAGGAACAAGGCGGCGTGCAACAGGTACAGCAAGATGCTGGGCAGATGTATCTGGATTGTCATTGTGTATCACAGTAACAATCTCTTCGAGCAGCTTATCCCTACCACCCCGGAGAGGATCCTGAAGGAACAAGTCAGTATGCGTCTTTCCATCATACAAGAACAGATCTGCTTTAGCGCCATTCTGTTGTAAAGCATCAAAGAAAGCCTCGCTGCATTTTTTCAATTAAGTCAATCAATAGAAATAGTCCAATATGGCAATATCCATAATATAGAAGTTTCGTCAGATAACACAACTACAAAAGTTACTGGTGAGGAGGAAAAATAAACAAGTGACTAAATCTCCTAAATGAAAGCTAGATGGTAGCACTAGAATCCCTAAGAATAACACTTGTTTCTTCTTAACTAGTGTTAACTACTCAACACCAACAGGAAATGGCACAACGACATGATGTTGCACTAGACTTATCTCTTCTTCTTGACTAGTGCAAAACTACAATAAGATTCAAGAAGAAACAATTTCTGACTAGTCTATGTTTTTCTTCAGCATGCCAAACAACATGGAAAATTCATTTGAAATGGATGCAGACAAGATCAGGGCACTATGAAGTATAAACAATCCAAAAGTCCTTAGAATACCCAAGTCCCTCAGTTTGGTTTAGTCATCTCATTTTGTTTGGTCAGTAACAGCATGTGGAAACTTTATCATAAGGCATACTTATTATAAAATAATGTCAAAAAGGTTTAAATGAGTTTCATTTCACTTTGTTCGAGAGAAAAGTTTCATTTCACTTAACCTGAGACATTCATCTCCTGGAAGAGAAAACAACTGAATAAGTATATAGTTGGTTTGTCCAATCTAATGATTTCGAATCAATACGACAAGAAAACATGCACCATGTGATCAACCATTCCAGTTGAACCCACCTCTCAGCCGATGGTATTGAATAGTCACTTGTTCCATGAAAAAGGAATATTCGAGGTAATAGAGATACTGCAGACCTAGCAGCTGGGTCCTTAACCATCACCAGTGGAGAAAATTTTTGCAACGACTCCTCGCCTTCCATTATGCTGAGAAAGATCGATCGGTACAGGCCACGTTTATGGAAATGATCGACCAAGTTAAGAAGATTATAGCTGTAGAAATCATAAATCAACTGTCAAGTCCGATACACCAGAATTCCTGTATATGTGAACCATTAATGAAACTACTAAAAATGTAATATAATCTCATATTAACAACAAAGGTACCAAAATGATCCATAAATTACAAAGGCTGAACATGAATCATCAATAATATTTATAGAGTGAGCCCAATTGCCACGTCACTTCTTAAAAAGGGAACTTCTCATTTCTTAAATCTGGAGCAGCATATTACAGCTCTGCTCACAAAGAAGCTCAGCAGACTACATGATATATTCCACTGCACACTGTTGCAAATATTTGACGATACAAACAACTGAAAACTGAAAGTAGTGTGTACATGCGCATTCTCATACACATTATAAAAAATGCAAGCCTTGCTGCATGTCACCTACTGTAAGTGTAAAGAGAATAGGATATTACCCGCCAGAAATACCAAAATAAGCTTTTAGCTGTGCAATGCTCCAAGTGGAAGCATCTCCTTCACCAGATTCTTTAATAGCTTGGTGTAAGAGAGTACAAGCAGCAATATGAGCACCAGCAGATTGTCCAACAAGATAAATCCTGTAAGTATCATTTAGATAGAGCAGATACGGACAAGATGCCTCAATATATGCCATACCAAAATCAGAACGCTGAGTTGTTTCTTGTATTCATAATGCTTCAGAAGTTCCATATGTAAGATCTTTATACCATGCAGTGCCTATTACTAGAACCCTAGAATATATAAATAGCCAAAATGAAATATGTCTCTGACGCAATCTAACTCACATTCCACTGATGGTATCCTAATTATTAATACAGTAACAATTTGTGCACATCAGCGCATGAGAAGGGCATACGTTGGTAGGAACCATTTTGTAATTGCAACAGAAAAGTTTGAAAGTTTGATATCATTGTAAGTTATGAACCTTTCAGGATCACCTCCATAACTAGCTATATTATTGCAGACAAAGGCAATCCCTTGAGATGCATCTTCTACCATGTCACCAATAGTCCCTTGAGGAAAGTTTCTGTAATCAATGCATGCAACTAAGATGCCCCTCTCTGCCAAGCGCCTGCCCAAAAGGGCCCCCCACCCTTTGTACCCTATGATCCAAGCTCCACCCGTGACAAATGCCACAACTGGCTTCAACCCAGTTCTATCGGTAGGTATGTATAAATCCAGCCTGTTTCTTGGTTGTTCTCCATATACAACACTTCTACAAACTTGGCTCGAGAAGAAATAATAATATACAACTTGAATGAAACCTGGCATGAGCAAGAAGGTGTAACAACAGAGGGCTAGGAACTGCCTGATCCATCTGTAGCCTATCCCGAGGTAGCGGAGGAGGATGAGCGTGAGGCGCGTGAGTAGGTAGGTCTCCTCGGCCGCGCGGCGGACCTCCCGCCGGAAGGATCCGCTGCGCTGCCGGAACCGCTCGCTCACCACCACCCGCCGCCGCACACCCCCACCTCCACCTGGCAAGAGCGGCGCGTCCTCCGCTGCTGCTGATGCAGCGGCGGCGGCGGCTGGAGATGACGGCGGAGCCTCCCCCGTCTCGCTGGGCCGGGCTGCCGCGCGGTCAGCGAGCTCCACCTGCATCGCGACTGACAAACCAGCCGGCGACGTGCGATATTCCCCCACGTCGTCGTGACTCGTAGCGCTCCCTGCTCCGGGCAAGACGTAGCGCGGCCGCCTCTCACGCAACGGCGAGGTCGCCGGGGAGAGATGGCGGTCGTTCTGCGGCGGCGCTCCGGCGGACGACGGCGAAGAAGAGAAGATCTTCTCACTGGAGGGAGGGGGGGGAGCTGACAGGT

Explanation	CPC Score
noncoding	-1.20367

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0360400.2	6	29955929	C	G
Osa06LNT0360400.2	6	29956857	T	C
Osa06LNT0360400.2	6	29957168	G	T
Osa06LNT0360400.2	6	29957178	T	C
Osa06LNT0360400.2	6	29957358	T	C
Osa06LNT0360400.2	6	29958891	T	C
Osa06LNT0360400.2	6	29960251	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0360400.2	osa-miR169f.2	Cleavage	5.0	11.304	1	21
Osa06LNT0360400.2	osa-miR1875	Cleavage	5.0	10.665	1	24
Osa06LNT0360400.2	osa-miR2875	Translation	5.0	11.61	1	24
Osa06LNT0360400.2	osa-miR2873b	Translation	4.0	12.031	1	21
Osa06LNT0360400.2	osa-miR5486	Translation	3.5	11.358	1	21
Osa06LNT0360400.2	osa-miR5486	Cleavage	5.0	20.703	1	21
Osa06LNT0360400.2	osa-miR2275d	Cleavage	5.0	24.924	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0360400.2	6	qREP-6	Resistance or Tolerance	Other soil stress tolerance	nan	nan
Osa06LNT0360400.2	6	nan	Morphological trait	Root	RG653	RG433

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus