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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa06LNT0360500.1

GCATACAGTGTTTTCCTTTATATACTTTACACTAGGTAATACAAAAAAGTAACAGTGTGTACTGACAATTTACATCACATATATAAAACAAATGAAGCAACGGAATCATTACTAGACAGACACAACGAAAGCACAATCCTGGAATTCTCTCTTTTCCTTGGACAGAAACTATTGTGCTCTCAAGACATAAACTTGAACAAAGCAAAGAATACATTGGGTCCCATCATCAGAGAAGAACAGCTGTCTTGCCGCAAGTAATCAATAACTCAACTCTGTTTCAGATTGAGTTCCCAGGCCTAGAGAACAACCTGCTTTAATCACTGAAGCTGTTCCTACTGGTGACCACCAGTGGGCTGTAAAAACAACTGTTGAAGCTGGAGGATCACTGACCATTGTTAGCCAATGGCACCTCCATTGATGAAAAAATGGCTCCTTGATATGAGCTCAAAACAATGGCTATTGTTCAAACTTATTTTCAGCATAGAGCTCAGTATTCTGATATTCCTGATGATGGAGATGGAACATAAACCAACTACAAATTCTAAAAGTGATGGAAATCTTGACGTAGGAGTATAGGCGAGAACTGTATTTATACGTGAAGTAATTCTGCAGCTACTGTTCAGGACAGCTCATTTAAGGATCAATGGAGCCAGTGAAAGAACTTTCCTGTGTCTTGGGAGTTGGTGGATCCTCATCCTCCACAAGAAGAGGGTCTAAATATCCAATTGCCAGTACCCTTTGCGCCTCATTGTAACGGGCCCAGGTAACAAGGTATAGACCAGCAATGATAAAGACTCCTCCAATAATGCTTCCAAGATATATTGGGGTACCAAGAAATATAGTTGACAGGATGGTAGAACATGCTGGTTGGAGTGGATTGTAGAGGGCAACCAGAGAAGGACCAAGGATTTTGTTTGACCAAGTCATGATTGCGTAATTCAAGCAAGATGCAACAATTCCAGCATATAGAATAGCAATGATCTCGGTCGTTGTCAATGCCCATTCATGGAGCCCATTGGTTGTAACTACCCCTGTCAGCACCATGAATACAGTGGCAAATGAATAAGAGTAAGCTGTTAAGGATAAGCTCGCGGGATATTTTATCAGCACTGGAGCCTGTATGACCAGATAAGCGCCCATCAGGAAGCAGTTCCCAATGAGGCAGATGACACCAAGATTCCATGTTTCTAGACCGTATTGGAGCATGGCCGATGTCAACCATTGGGGCGTGTAAGAATTGCTGCTCCATGTGCCGGCCAGGACATTCTCACCCACACCATTGGAGCCTCCTCCTCCTCCTCCTCCCATGCCAATCAAGGATGGACCTCTATAGAACACCATCAGCACGGCTCCGGAGACGCACACAGCCGTGCCAAGAACCTTGACGATGCCGTCCTTGGTGAAGATATTGATCACCTCAACACCGACGATTGCGGCTAGGAGGAATGTGAACACCGGTATGGCTGGCTGGAAGGCTGCGGCGTAGGAGGCGTTGGTGAAGCTGAGGCCCAGCAGGAACAGGAGCTGGTTCCCGAAGATCCCGGTGAAGCCGAGGAGAGCGAAGGAGGCGAGGAGGTGAGGGGTGAGGGGGCGGCGGGTGCGGCGCTCGCGGAAGAAGGCGGCGGGGGCGAGGAGGGCGAGGGCGACGAGGTCGCGGTAGACGCAGAAGACGATCTGGTTCATGCCGACGTTGAGGACGGACTTGGTGAGGACGTGGTAGCCGCCGTAGGCGAGCTGGGTGAACGCCATGGCGGCGTGCGCGCGCCACGCCTTGTCCGCCCACAGCAGCCGCCCGCTCCCGCTCACGCTCCACACCGACGACGACCACCGCTGCAGCATCGTCATCCCCTCGCCGCCACCCCGTTCCCTCCCCATCTCCGGCGACCCCGCCGCCGCGATTCCTGCCTCCTCGCCGCCGGTTGGTGTCTCTTGCTTTTGCTTGAGCTTGTCTTGGAAGGCGTCTACTGACT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.498318
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0360500.1 6 29979828 C T
Osa06LNT0360500.1 6 29980175 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0360500.1 osa-miR5833 Translation 5.0 23.711 1 21
Osa06LNT0360500.1 osa-miR395c Translation 4.0 9.468 1 21
Osa06LNT0360500.1 osa-miR535-5p Translation 4.0 21.318 1 21
Osa06LNT0360500.1 osa-miR444f Cleavage 5.0 14.05 1 21
Osa06LNT0360500.1 osa-miR1846a-3p Cleavage 4.5 21.307 1 21
Osa06LNT0360500.1 osa-miR1846b-3p Cleavage 4.5 21.307 1 21
Osa06LNT0360500.1 osa-miR2104 Cleavage 4.0 8.893 1 22
Osa06LNT0360500.1 osa-miR2924 Cleavage 5.0 22.697 1 21
Osa06LNT0360500.1 osa-miR5151 Cleavage 4.0 14.983 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0360500.1 6 nan Morphological trait Root RG653 RG433
Osa06LNT0360500.1 6 qREP-6 Resistance or Tolerance Other soil stress tolerance nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus