>Osa06LNT0360600.2

GCCAAACAAGATATTTTTTAAATTAATAAAAGTCCCTCGGGTACAAGCCTACAACAAAAGGCACAACAATTCTTCTACAGAAGACAAAATTCAGTCACATACATTACTATCGCATCACAAGTCGATTAGCAGCTGCAGTCACCAAACACCAGCAACCCGTGGACCCTGGTGGCCTTAAGAAAATGACCAAGCATATGTAGCTAATGACATCATATAAACGGCAGAGCGATCTTCTGTGGAGACATCATGCAGATTATACAACACTGCTCATTTTCTTCTACGATGGCGATGACTATAGTGCCGTTCGGAGTTTGAATAATCAGAAGCACTTGAATCAGAGTAGTGCCAGTTCACCTTCAATGTCCTTGAATGCTTATTGCTCTCATAAGGCCTTGATTCAGTGTACTCCCGCTTATCCCTCGATCTCTTTGAATGCCTATCCCTGTCATGCGTGCTCAAGTCAGTATAGGCCCTCTTCTCCTTTGATCTCCCTGAATGCCTATTGTGCTCAGGAGAACTTGAGTCACTGTAGTACCTCTTTTCCCTTGACCTTCTTGAATGCCGATTGCTCCTAGAAGAACTTGAATCGCTGTAGTATTGCTCATCCTTATGTCCCATTGAGTGCTTCTCATTGTCCGAAGTACTAGTGTCACTGTAGTGGTGCTTCTCCCTCGATCGGCTTGAATGCCCATTTTCAGTCATATTTCTTTTCTCCTTCCTATGCTCTCTCTTCGGATGCCTCCTTGTATCTCTATCAACTTCAACTTCTGAATCAGATGAAGAATATGACTCAGTGACATCTCTTTTCTTCTTCCTGTGCTCCCTCTTCGGATGTTTCCTTGTATCTATATCAACTTCTGAATCAGATGAAGACTCTGACTCAGTGATATTTCTTTTCTTCTTCCTATGCTCTCTCTTTTGATGTCTTCTTGTATCTCTACCAACTTCAACTTTTGAATCAGACAAAGACTCTGGCAGGTGTTTCTTCTTGTGCTTTGATTTTTGCTTGCTTTTTCTAGCTTCCACCTCAGCACCAGAAAATGACGAATCAGAACAATATTCTTTCTTTCTCTTGCTCCTTGATGTCCTGTTGCTCTTCTCAGCTTCAGAGTGTGAAGATTCCTCATGAGCAGCAGGCTCAGCCTGCCTATGCTTGCTTTTACTCTTGGAGCGTTTCTTTGATTTGCTAGCAGAAAAGTTGGAAAGAAGAGCTGGAATATCACATCCACCAAGAAATCCTCCATATTCATCAAAGATGTCCTCGGCTACAATCTGCTGATTAGGATCATCTGGGTTGTATCCACCACGTGGAGGGCTCATGCCTGGCTTTTGCCTAAGTTCCCACTTCAAAGGCTCACTTGAATCAGTCTGTGCCATTATAGCTGTAAGAGGATCATCCCTTTTCAGTCGGCTCTCCTCGTTAGGCATGATCACATCCTTCAGTGGGCATTCTCGGTCACCACTCTGATGACCATAGTTTCCACACCTTAAACATCTAACGTTACGAACTTCAACTCCAAATGGTTTAACCCTCGCAGGAGCACCTGTCTCCAACCTTGGAGCATTTTTCAGCACTTCAAATTCTTGTTCTGTTGGCAATGGCCGGCCAAAAACATCTTTTGGCCTGTTTTTCTTATCTGGACCTGCGTGGGTCTTGTCAAGTTCCTTATCAGGCATTGAAGAGGTGCTTGCAGCAGCAGCACTTTGGGTTGCATCACCTTCACCAGACCTCCTCTTCTCATCTTCAATTTCAGCTGCTTTTGCACTCTCTGCGTTGTAGCCAGGTGGGCGGACATACATGAAACTCACAGCTTTCATTATCTCCATCTGAACTTCTCCTTGTCCTTCTTGGAGAAGAGGGCGGTCTGGCGGAAGAACTCCTGCTCCTGCGCGAACTCACGCTGCACCTCCTCCTGGCGGCGCGCGCGGTTGGCGTGGATCTGCTCGGCGATCCACTTCCGCCGCTGGTTCGGGTAGGAGAGCGGGTGCCATGGCTTCTGGTTCAGGTACGAGTGGCTCCACGCCGTCCCCGCCTTCTCCTTCAGCTCCACCTCCCCCGCCGCCATCTTCTTCCCTCCCCCCAACCCCCCTCGACTCCCCGTCACCTCCTCCTCCATCTCCGGCCGCCTCCCCCAATCTCGCCGCTCCCGATTCGCCGCCGCTCGAACTCGAT

Explanation	CPC Score
noncoding (weak)	-0.941327

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0360600.2	6	29991104	T	C
Osa06LNT0360600.2	6	29992249	A	G
Osa06LNT0360600.2	6	29992340	T	C
Osa06LNT0360600.2	6	29993212	A	T
Osa06LNT0360600.2	6	29994330	G	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0360600.2	osa-miR5530	Translation	4.0	17.959	1	21
Osa06LNT0360600.2	osa-miR5542	Cleavage	5.0	4.937	1	21
Osa06LNT0360600.2	osa-miR5807	Cleavage	5.0	12.163	1	24
Osa06LNT0360600.2	osa-miR6253	Cleavage	4.5	18.055	1	22
Osa06LNT0360600.2	osa-miR160a-3p	Cleavage	5.0	15.906	1	21
Osa06LNT0360600.2	osa-miR160b-3p	Cleavage	5.0	15.906	1	21
Osa06LNT0360600.2	osa-miR166l-5p	Cleavage	4.5	11.307	1	21
Osa06LNT0360600.2	osa-miR530-3p	Cleavage	4.5	14.266	1	21
Osa06LNT0360600.2	osa-miR1869	Cleavage	4.5	15.737	1	24
Osa06LNT0360600.2	osa-miR1846e	Cleavage	5.0	16.213	1	20
Osa06LNT0360600.2	osa-miR2090	Cleavage	4.5	17.686	1	22
Osa06LNT0360600.2	osa-miR3979-3p	Cleavage	4.0	6.806	1	20
Osa06LNT0360600.2	osa-miR5151	Cleavage	5.0	14.022	1	22
Osa06LNT0360600.2	osa-miR5492	Translation	4.5	9.146	1	21
Osa06LNT0360600.2	osa-miR5492	Translation	5.0	10.841	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0360600.2	6	qREP-6	Resistance or Tolerance	Other soil stress tolerance	nan	nan
Osa06LNT0360600.2	6	nan	Morphological trait	Root	RG653	RG433

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus