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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa06LNT0360800.1

GGATGGAAAGGAAAGCACGCCCATTATTTCATCACTGGGATCGAATTAAACAGGCAGTACAGCTGGTATATCTGAATTCTTGTTTCAACAAATAAATATCATATGTACAAAACGTAAGATTGCAGGATACAATTAGTTCCTGTACAATGAGTTGTATCTACAGAATGAATACAAGGTAGTGATGCTTATCCATGCTGAGCGCTGCGGCTGCATTCCATGGCCAGAACCAAGCACTTTCTAGAGTCCCATTTGGAGTAGCAGCACTGTCTAACCATTAATGCAGATGCGGCTGGATATGCATCACCATCAGCTGTTAGCACTCATGATTGAAAGAGGGTAACAGTTGCAATATATCCATTTTTCATGACCTCAAAAGCAATATTCTGATATCCATAGACAAAAGTTGACCCAAATGGATTATTCATGGAGCCTTGCGTCTGGATTGCTGCTCGACCACAATCACCAAGGATCTCCTTGACTTGTTCCCACTTTGTGCGAGGCGTTATGCAACTCTTAGGGATACTACCAGGCTGATCTGTCCCTTCAGCTTCGGCATCATAGATAACAAAGTTACACTTCATATAGGAATTGAAATCTGAATGACCAGGGAAGTTTGTGTGTAAAACAAACTTCTTTATCCTGTGTGTCTGCCCATCAAATAAGATATCAATACCACGAGAGAAGTAGTTGTAAAAATAATCCCCACAAAGAGTTGTCCGAGGGCGGGGGTCTGATGCTGAATGTATTACCATCTGGTCAACCTGCTTCTGGTGGATGCCACATGGACGACCCAACTCAGTCCACACGTCCTGCGGTGATGCACCGAAAGGAATATGTTGCCCGCCTATCGTGAACAAAAGCTCTTCACCAAGCTTTGCATGCACTTCCTCCATGTACAGGCTGCCTGCAGGTAATGCAGGAACAACTGCTTTATCCATCAGTGATCCAACCCCAACCTTGCTATCCGTTGAACTGTCATATATAGAAACCCGGCAAGTAACAGGAGTTGTTCCGTCAGGAAATTCCAGAGGCAAATCTGCCACTTCCCCATTGGTAAACAAATTTGTATATTGACTGGGGATAGGGAATGCAAAGGATAACCCTGGATAGAAGAGGGTGTAAATGCCCCTCTCTTTGTCATATATACCCGGGAAAGTAGGTCCGAATAATCCATAAACAGCCACAAAAGTGGCTAATGTTGATGGGCCACCAATTAAGGACTTTGCATATCGCAGTTGCAGTCTTTTCACGTCATAGATCTCAATGAGACGAAGCCTCTGTGACCAAGGATCGAAGCGCAGGTGGAACCCATGGTCAGGAAAGCTTATGACAAAATCCAACTTTAGAGGCTCCTCATCGAAGTACTTCACGTGGACAACGTCGTAGAGTGTTGGCTGGCCCTCTATCTGCGCGAACGCATCGGAAATCGGCATCCCGAGGGTGAAGGGCCCGACGCCGTTGCCGGGGCGGAGGTCGAGCGTGATGGCCCCCATGGCCGTGCCCTCGCAGCGCCGCCTCACCGGCACCGTCGCCGGCGACGGCGGCCCGACGGCCCCCGCGCCGCCGCCCCCCACCATCGCCGGCGATCTGTGCGCCTGCATCGCTGGGCCCACCTCCTCCTCCTCGCCGCGAACGGATTACGGATTATTCCTTGCGCTCTCTCCTCCCCTCTCCTCTCGATTCGATTCGATTCGGTTCGCGTGGGCTTGCGTCTACTCCTCCCTCTTCTTCTCCC

Coding Potentia
Explanation CPC Score
noncoding -1.1742
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0360800.1 6 30274604 T C
Osa06LNT0360800.1 6 30274649 T G
Osa06LNT0360800.1 6 30276662 T C
Osa06LNT0360800.1 6 30276845 A G
Osa06LNT0360800.1 6 30277902 T A
Osa06LNT0360800.1 6 30275748 T A
Osa06LNT0360800.1 6 30278619 T C
Osa06LNT0360800.1 6 30276219 A T
Osa06LNT0360800.1 6 30276232 G T
Osa06LNT0360800.1 6 30276649 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0360800.1 osa-miR5532 Cleavage 4.5 21.833 1 22
Osa06LNT0360800.1 osa-miR5818 Cleavage 5.0 16.927 1 21
Osa06LNT0360800.1 osa-miR5832 Cleavage 4.0 20.898 1 21
Osa06LNT0360800.1 osa-miR6246 Cleavage 3.5 20.62 1 23
Osa06LNT0360800.1 osa-miR7693-3p Cleavage 5.0 18.156 1 22
Osa06LNT0360800.1 osa-miR160f-3p Cleavage 4.5 16.072 1 21
Osa06LNT0360800.1 osa-miR530-5p Cleavage 5.0 21.193 1 20
Osa06LNT0360800.1 osa-miR530-5p Translation 5.0 22.435 1 20
Osa06LNT0360800.1 osa-miR1430 Translation 4.5 20.473 1 21
Osa06LNT0360800.1 osa-miR396f-3p Translation 5.0 17.092 1 24
Osa06LNT0360800.1 osa-miR2867-3p Cleavage 4.0 24.552 1 20
Osa06LNT0360800.1 osa-miR2919 Cleavage 3.5 9.643 1 19
Osa06LNT0360800.1 osa-miR2919 Cleavage 4.5 16.781 1 19
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0360800.1 6 nan Morphological trait Root RG653 RG433
Osa06LNT0360800.1 6 qREP-6 Resistance or Tolerance Other soil stress tolerance nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus