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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0360900.1

GCTCCAAATTATTCGCATTGATCATCATCTCTCTCTACAATACAAATGAATCAATGATCGATCTCTCCACAATTTGTTCCTCACGCACTGGTTGACCGTCGTTGACCGCAGCCTCCTCCGGTGACTGATCTGACGTCACCTCTTCGCCGGCGGCAGGCGGCGGTCGCCGTCCTTGTCGGCCGCCGTCGTCGTCGGTGGCTCCATCTGGAGCACCCTCTCGAGCTCCTCGACGACCTCCCTCATCGCCGGCCGCTCCTTGGGGTTCTTGACGAGGCAGCGGTCGGCCAGCCGCGCCACCTGCCGCGCCGCCGCCGCCGGGTACCGGCCGCCCAGCCGCGGGTCCATGATCGACCGGAAGCTCTGGCTCTCCGGCGGGTGGCGGCGCACCCACCCCAGCAGCTTCTGCTCCTCCGCCGGCCGGCTCCGCTCCAGCGACCGCCGCCCCGTCAGGATCTCGTACAGCACCACGCCGAAGCTCCACACGTCGCTCTTGGTCGTCAGGTGCCCCGTCTCGATGTAGTCCGGCGCCGCGTACCCGTGCGTCCCCACCACCGCGGTGGAGACGTGTGTCTTTCCTTCAGTTGGCCCCTCTCTTGCTAGCCCAAAGTCTGAAAGTTTTGGCTTGAAATCGGCATCAAGAAGAACATTGGCTGCCTTGAAATCCCTGTATATCACCTGAACTTCTTGCAGGCCTTCATGGAGGTAGTCTAGGCCCCGCGCGGCGCCGATCATGATCTGCAGCCTCAATCTCCACGAGAGGGGAGGATGAGCTCGGTTGAACAGATGATCATCTAGGCTCTTGTTGGGCATGAACTCGTAGACCAGCAGCCTGTGCTTGCTTGTTTCTGAATCCACTGCACAATAGCCAACAAGCCTCACTAGATTCGGGTGCTCAAGAACACCTAGGAATTGGACCTCAGCCAGCCATTGCTTGTGCCCCTGCAGGCTGCGCTGGTTGAGGCGCTTGACGGCGAGGACGACCCGGCCGCCGCCGCCGCCGGCGGCGGAGCGGAAGAAGGCGCGGTAGACGGAGCCGAAGCCGCCCTCGCCGATCTTGAGCGCGCGGCTGAAGCCGTTGGTGGCGCTGCTGAGCTCGTCGAGGTCGAACACCCGCAGCCGCTGCGCGCCCCTCTCGTCCGACAGCTCCTGGATGCTCCTCGTCGGCGTCGACGCCGATGATGCCTTGCTCTTCTGCCCGTCCGACGTCGGCGCCGGCGACCTGGCCCCCGACGCCGCCGCCCGCTGGTTCTTGGCCTTGCTCTTGAACGCGAAGCACCCCATATCTGATGGGCTAGCAAATTAAACCGTCGCCTCGCCTCGCCTCGCTTCCGCGTCGTTCGTTCGCGGCGATCCCAACGCACACGCCGCGTCTCCCACTTGTACCATCACACTAACTCACCTGATTCATTGCTCCATATCTGCATATCAGCATCTTTCTTTCTTCAACGTGTTCACGTCAAAATTGAAAGTTTGATTGAAATTGAAACG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.61876
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0360900.1 6 30347057 A G
Osa06LNT0360900.1 6 30347113 T C
Osa06LNT0360900.1 6 30347765 G A
Osa06LNT0360900.1 6 30349061 A C
Osa06LNT0360900.1 6 30349275 C G
Osa06LNT0360900.1 6 30350296 G A
Osa06LNT0360900.1 6 30350333 A G
Osa06LNT0360900.1 6 30350335 T A
Osa06LNT0360900.1 6 30350341 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0360900.1 osa-miR319a-3p Cleavage 4.5 17.995 1 21
Osa06LNT0360900.1 osa-miR1430 Cleavage 3.5 18.575 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0360900.1 6 qREP-6 Resistance or Tolerance Other soil stress tolerance nan nan
Osa06LNT0360900.1 6 nan Morphological trait Root RG653 RG433
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus