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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0361600.1

AGAAAAGGTGTTCATCTTTGCAGAGACAAGATCTAACACATTTCTAACTGCAGAGGTAGTTCATAGCATCCATCGATCACCTACACACAATATCCTCTCTCATGCCTGACCCCTGCACAAACGCACACCGGATTGCAAATACACATAATTTAGATCTTTCTAATGATTTTGTATCGTCAGATAATCTTGCTTGTTTTGGTCGACCTTCAGAATTGAGTTGATGAAGTTCGTCGCAGTGAGCTCTTTGTAGGCATCACCAGTGCAGCAAATAGAAGATGAATTACAAGACTTACCTGTGATGAATTACAAGACTTACCAGGCATCACCTGTCAAATAATCCATTGATGAAGTTAGTTTAGAAACTCAAGAGAGTACCGTTATAAATGCAGACTTAACATCAAGGCTAGCACAAATAGAAGATGAATTACAAGACTTACCTGTGAGAATGAAGATAAGTTGAAAAGTTGAAGGATATTACTGTTATTGTCAAGGACATGGGAGGACCAGAGAGCTTACCCAGTCATTACAATTTAGAGATGAACCACAGATTTGCATATGGAAAATGATATAAATGATATAAGAGGTTTGCAAGATGATCTGAGATCTAGCAATGAGAATTTGCTAAGAGAAGAAAGACTGATATAAGAGCTTTAGTCTATCCTTGCAAGCCTGACTTCGAAACTTAGTCAAAAGAGTATGGCCGTGCTTTTCAATTTCTTATGTAGTCTTAGCTGCCTCCAATTTGTTCACTTGTTGGATAGATTAGGTAACATAAATTTGATTGATTTTCCTGATGATCATAGATTTGTTCACCTCCTCCGCCATCTTGTGCCTGGCGCCGCCTCCGTCTTCGGTTTGCAAACGTGAACACTGGCATCACCTACATGAAAAATCAAATGGTTAATGGTGTGCAACACTGTCAACTTTAAGGTGAATTTGTGTCAACAAAATTTCAGTCAAGCTGCACAAAAGATTCAAAAGTCCCTGAAATAAATTGAGATAACAAACAATCCTCCATGCATAACAGTATTGAGTACTGGCCCCATTCGAGTTTAAGATAAAAGATTAAGTTCGGACAGGTAAAACGAGAAAATCATTAACATCTCACTAATTAAGGTTTAATTATTTTAAAATTGAAAAATAGATTTATCTTATAATTAAAGCTTCTATATAAATTTTTTTCGTTCGAAATATACAGTTCAACAGTTTAAAAAAACGAATTTATAAAAATCTAGGTAAAATCTGTATCTTAATCAGAAAAAGAAAAATAGAGGCTGAAGAAGCCTTGAGAGAGCAGTAGAGTATGGCACTGGGATGATGCCAAACTGCTTTCAGAACCGATTCACTGCTGCTGTTGGCATCTGCAGATTTGATGAGTTCAGCTCCAAAATGAAATCTATAGCTCTGGCAAATCCATCTGGGCAGCACCGAGTCGCCGGCGCGTGCTGCGTGGCGGCGGCAACGCCGGGAGGGACGAGGCGGGAGGATGAGAGCACCACGGCAATCCTCTGCACCGATGAGATGATGCTGCACATGTACTGCTGCGCCATGGCGGGCACGCTGCCCTGCAGGTGGCTCTCGAACGCGAACTGGAACGCGATCGTCATCACCGCCTTGGAGCTCGCCGCTGCTATTGATGCCGCTGATCCTGCTCCATGGCGTCGCTGCTTCGAGCATGGAAGCGAGATCTAGCATGCAGTTCGAGCTAGATGTGTCAGAGGAGAATCGATAGGGATGATGTAGAAACCGGAAGGCAGCAGCGGAGAATCATCACTGAACGATGCATCGATGGGTGCAAAGATTAGCTCTGAACATGTTCCTGCACTGCTCTCCTCTACTCCATTGTACATCTGCCATTGCAATCAGGCCAAGAACACAAGTTTTACAGAGGAAAAAAGAAAATGATTCTTCAACTGGTGATAAGTTTCATGAATCAAGAAGTCACCTGCAAGAGGAACAGATCACGGTGCACCAGTGTATCTTGGTAGTTTCTGGTGTTTCCTAGCTTGATAACTTCCAGGAACTCTGCAGGTTCAAAAGTGTGTGCTAAAGGAAGTATGACCTGACCACTGAATCCTCCAAGACGAGACATGGGTAAATTGCAGAAGTTTGGTTTCATCGTCAGCCCATTGTGACTGGTGTTCGCGCAAAAATTGCAGTAGTGATGGAGGAGAGACATCCTGCAACAGCATGGATGCCTTGGCACAAAGAACACCGGTACTGACAATAGTGAGTCCACTGCTGAATGTTGCATTGCAACCGGTCACTTTGGATGAATTGACAGAGATGCAAACATCGTCGATGCCATCGCTCTCGATCACGGACCATCCATCATCCGCAAGCCCATTGAGAACTTCATTGAAGCCTCTGAAAAGAGAGCATGCAAAATTATTTTTCAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.811624
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0361600.1 osa-miR5814 Cleavage 4.0 21.56 1 24
Osa06LNT0361600.1 osa-miR1432-5p Translation 5.0 16.162 1 21
Osa06LNT0361600.1 osa-miR1863a Translation 5.0 19.507 1 24
Osa06LNT0361600.1 osa-miR1320-5p Cleavage 4.0 6.884 1 21
Osa06LNT0361600.1 osa-miR2094-3p Cleavage 4.0 16.173 1 22
Osa06LNT0361600.1 osa-miR2925 Cleavage 4.5 23.441 1 19
Osa06LNT0361600.1 osa-miR5152-5p Cleavage 5.0 19.983 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0361600.1 6 qREP-6 Resistance or Tolerance Other soil stress tolerance nan nan
Osa06LNT0361600.1 6 nan Morphological trait Root RG653 RG433
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus