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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa06LNT0362000.1

CCTTGTGTAGGGATTCATCCCCATAGCAGATAATAGAACAGGCAGCAGAAACAAATGGCATGTTAACAAGTCCCTCGACATACAGGGTCCCATCTGCAAGACACTTGTTGACAAGTTTAATCAGCATGGTGGCAAATGGACGCCACCTCGTCTCACCTGTCAGATCAACCAGTACTCCGGGTCCATTCTTAGGCTGGCAACTGTCTGGGAGATCACTAAAAATCCCAGGTGAATCCAAGATATCTGAGAAGGATCCGCAGAGGCATTTAACTAAATATCTTTCAGTAAGCACGCCACTTGGCCTGTCCCCATGCATTGATGCCACCACATATAGCACATCTTGTACTGCAACCATGACATCCAAGAAGAACTGCCGGTAGGCTTCTCGGTCACCTGTGCGAAGAAGCGAGAGAAGAGACCAAACTGTATCAAATATAATCTCATGCCTTGACCGGAAGTTGGGCTCCGCGAAGAAGGGGAGGACACGGCCAATGACGCGGATGACGTCGGCGGCGCGGCCGTGGAAGAAGACCCCCGGGAACTTCCCCGCGGTGTAGGAGAGCAGCTTGAGCACCGCGGTGGCCTCCCTCCCGTCCGCGGTGGGGGATGAGGGGACGACGTAGTCGCGGAGGAGGTTGGGGAGGACCTCGCGGAGCTTGACCTCGAAGTGGACGGATGCGGGGGCGGAGGTGGAGGTGGTGGTGGAGGACGCCGCGATGAGCTCGCGGAGCTCCTGGATGTGGCTGGAAAAGTTGGCCATCGCCGGCGATCCCCGCCGCCTCCGCCGCCGGAGCGGGAGCACCGCCGCCGCCTCCTTTCCCTCCTTAATTTCGAACGGAAAAAATTCCAGACTCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.998458
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0362000.1 6 30814453 C T
Osa06LNT0362000.1 6 30815046 G A
Osa06LNT0362000.1 6 30815374 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0362000.1 osa-miR5833 Translation 4.5 18.701 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0362000.1 6 nan Morphological trait Root RG653 RG433
Osa06LNT0362000.1 6 qREP-6 Resistance or Tolerance Other soil stress tolerance nan nan
Osa06LNT0362000.1 6 nan Morphological trait Root RM5814 RM3509
Osa06LNT0362000.1 6 nan Morphological trait Root RM5814 RM3509
Osa06LNT0362000.1 6 nan Morphological trait Root RM5814 RM3509
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus