>Osa06LNT0362100.1

TTTTCCTATTAGCACTCTGCAACAGTTTTTTTTTTTTTTTGGAAAGGAATCTGCAACAGTATTTTCATCATACATCTGCAGTCACTGCAAGGTGCCATTGTCATGTTGCCAAGAAAGTTTATTAACATGAAAGGTAACATGGAAGGGGTGACAGGACAGCAAATTAAACATAATAAAACCCTAGTCTCTAAACTAGCACCATTCATCCCTTCAAAATCCATTTATTCAGTATTCTTCTGATGCCTCACATTTGAGAAGACCACATAGTGTACAGGCGTACAGCCGTGGAGCGTGAAGTCATCTGCAGATTATTAGGTTTCAGAAACGCAGAAAATCTTTCAGGCCAACGTCACTTGTTGGTTGGGAGTTCATTCTCCTTCCAGGCAGAAAATCCACCGGCGATGTCGGTGACAGCAGTAAAACCAGCAGAGCAGAGTTCAGATGCTGCCATGAGGGATCTCTTGCCACTTTGGCATCCAACGATGATCTCATCCTCCTTCCCAAAGGTAGTCGACACTTTCTCAAGAAAATGTGTGTTTTTTGTCAGTCCTGAGCCGGTTTTGTACATATATGGGATGTTTACAGCTCCAACTGGATGCCCACCTGCAAACTCACCCTCGGTTCTGACGTCGAGATAGCGGTGTCCGGCCTGCTGCAGCTCGTGGGCGACGCGCACCGGCACCGACCGCGGCACCGCCATGTCCGCGCCCAAGGCCTCGGCGGCGCCGCCGCATCTGACGGATCCGAGCAACCTCTTTGCCACTACCGCCGCCGGCCTCGCCGCCGCGAAGCCCTGGGTGGTTGCGCCATGCCGCAGCGTGAGGAGGACAGAGGGGAGGGAGACGCGCGCCAAGGTCGCCATGGAAAATTGGAACTGGAGATTCTACT

Explanation	CPC Score
noncoding	-1.00896

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0362100.1	6	30824435	G	T
Osa06LNT0362100.1	6	30824803	T	A
Osa06LNT0362100.1	6	30825274	A	C
Osa06LNT0362100.1	6	30825359	T	G
Osa06LNT0362100.1	6	30823811	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0362100.1	osa-miR5535	Translation	4.0	16.777	1	22
Osa06LNT0362100.1	osa-miR416	Translation	4.5	22.327	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0362100.1	6	qREP-6	Resistance or Tolerance	Other soil stress tolerance	nan	nan
Osa06LNT0362100.1	6	nan	Morphological trait	Root	RM5814	RM3509
Osa06LNT0362100.1	6	nan	Morphological trait	Root	RM5814	RM3509
Osa06LNT0362100.1	6	nan	Morphological trait	Root	RG653	RG433
Osa06LNT0362100.1	6	nan	Morphological trait	Root	RM5814	RM3509

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus