>Osa06LNT0362400.1

ACAGAAAACTGGGTGAAGAGTTGCATGTTATTGCTCACTCATGTAGCAGCGTTGAATGTGTGAGTTGTCAAGATCTACATACTTGGACCAGTAGGGCTTGTACTTGGAAATGGCAAGGTCTAGCCAGGGCTTGTAATTCCCATTGTAATGAACTACTGCTGCATTCTCAATCTCAACAAGGTCAACAGATGGATCATAGCCAAGGCCCAACACATGCCAAGTGCGATTCAATGGGTATGTCAGGTTGTAGAAAGTAATCAGTCCTGGAGGCAATGTATCCAGCTTCCACAGCTTACGATCCTCATTCAGATCTTGCCAATAATGGTATATTCCAGTGATATTTTGCTTCTTCCACTCTTTCAGGTCAAACATGTTCATCCCAAAAGCCCACCCACAAGCATGTGGATCAAAGTTCTCTGAGATCTTTGGGTGTGAGAAATTGAGGTATGTGTTGAAGCGATGGAAACTTTCTTTGCAGGTTTCAACTGCACCATTTACTATCCCTTTAAGATCAACATCCCATAGCGGTGTCAAGTCCTTCTGCACAACAACATCGTCATCGAGAAACAGTATCTTGTCAAGCTTGGGGTGTATTTCTGGCATGTAGAACCTTAGATGGTTAAGCATAGACAGATATTTGGGGTTCCTGTACTTCAGATTTTCATTTCCATCAGAGAGTGACGATGGATCATGTGCTTTGAAATAGTACTCTTTGAGCCGAGCTGACTCAAGTTGTCGTAGAACTGAACAGTATGACGAATTGAGCCACTTGAAGTTGTCAATGTTTTCCACATGGACAGTAGCAGGTAGAGGAGGATTGCTTATGAACCACATTGTCATAGCTGCAAAATTAAGTCTATCAGTGACAATGTGGAATACATGCTTCTCTGGTTCCTTGGCATGTGTCACCGTTGATCTAACAACTACTGAGGCTGCAAGGACGTTATCTGAAAATATAGCGTAGTGGTATAGAGACCGATCCTCACGCTTTGCCTTATCTTCTTCCTCCTTCAAAGCAGCATCACGAAAATATTCCTTGACCACACCATCACGAAAATGATAATCGGTTGTCAGCTGCATATGCAGACAGTGCAAAGGCATGGGGACTGTCTTTGCAGCATGCTGCACCAGGAATGAGTTCTGCTTCTTAACACTATCGATATTTAGTTCTGTAGACTGTAGCATAACACGCAATCGTCTGGATACTTCACCAGAGTTGTACAGAACATCTCTAGCTGAAGACAGGGCATGCCCCATTGCTTTTGCTCGCTCTAAAGCACTCAAATCAAGTTTGTAATCCATGTGTGCATCCCCAATACCTTCTTGGCTTTGTTTTATGCATGTCATGAGCAACACGTACAGGTCAGGTTGCTTCTGGGAATGTGCAATTGTGGCATACACCTTGGCCATTATAATCTGATCTTTCATGAGTCTGAGGGTTGAATCTGTGTTAGTATGGTGAAACCCCGGCCTCCATATGTTGTAGCTGGCTCTTACTTTATTACTGAAGTTCCTTGATCTGTCTGTGGCCACATTTCTCATGTTGAGTTCAGCCTCCCTGTCCACCTGAAGCAACTCCTGGGTCCTATCCTCCTTTCTTTTGCGTCGGAATACCTACAGGAACCATAATGGTATATTGGATACAGTAAGATGGCGAAGAGTTAATCAAACAGGAATTATAAAAAAGAACATAACATACAGGTAAAAATATCCATCATCATTTATAATTATGATATAAGAAAAATAAGAAATCAACCACTCTCTTTAATTTAATCGGATCGTTTCTTCTGGTTTCCAAAGTTCCTGTGGTTGAAATATTTGAGATTTCTGACCCAGTGTCTGGTAGCTGCTCCTTCGCAATTTCTTGCTATTACCGCAGCAGAAAAAAGAGCTGTGACAAGCCAAAACAGCGCAACTGACTTGTCCAGATAAAAACACAATTTTGTGAACAACATACAGTTTGAGCTAGTGGTTGGGTATCTTTCGGTTGCAAAGGATTCTTCCAGATAGAGGACGAGAGGAATTCTGTCATGGTAACTTTGAAGAGCTTGATCCGACCATCCTGGTCCGTGTAAGCAATCGTCTTATCGGCATCATCCATGCCATTGCGGCATCCATGACAGCTCCCAGGACCCTTGCGCTCGCTGAAGATTCAAGAATCCAGGATGGTAAAGAATCTTTATAAATAAAGAATACAAAGTACACTGGAAGGGAGAAGATTATTATTGTTGTTATACGTGTGGTGATCGGAGAAGAGACATAGGGACAGTGCCGATCCGACAGAGGGGACATGAATCAGGAGCTGGAAGGAGAGGAAAAGGAGGAGGAGAAGGACGACGGCGAGGAATCCGGGGCGGCGGCGGAGCGGGAACATGCATGCTTCTGGGCGCCGACGCCGACGAGGAGATGGAGATGGCCATGGCCATGGGAATGGGGATTGGGATTGGGATGAAATTTTGCTTTCCG

Explanation	CPC Score
noncoding	-1.18165

Transcript ID	Chromosome	Locus	Ref	Alt
Osa06LNT0362400.1	6	30950795	C	G
Osa06LNT0362400.1	6	30951172	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0362400.1	osa-miR159c	Cleavage	5.0	11.575	1	21
Osa06LNT0362400.1	osa-miR159d	Cleavage	5.0	11.575	1	21
Osa06LNT0362400.1	osa-miR159e	Cleavage	5.0	11.575	1	21
Osa06LNT0362400.1	osa-miR395w	Cleavage	3.5	19.044	1	22
Osa06LNT0362400.1	osa-miR1428a-3p	Cleavage	4.5	19.202	1	21
Osa06LNT0362400.1	osa-miR1856	Cleavage	4.5	17.844	1	21
Osa06LNT0362400.1	osa-miR2091-3p	Cleavage	3.5	17.673	1	22
Osa06LNT0362400.1	osa-miR5078	Cleavage	5.0	23.135	1	21
Osa06LNT0362400.1	osa-miR5150-3p	Cleavage	5.0	16.648	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0362400.1	6	qREP-6	Resistance or Tolerance	Other soil stress tolerance	nan	nan
Osa06LNT0362400.1	6	nan	Morphological trait	Root	RM5814	RM3509
Osa06LNT0362400.1	6	nan	Morphological trait	Root	RM5814	RM3509
Osa06LNT0362400.1	6	nan	Morphological trait	Root	RM5814	RM3509
Osa06LNT0362400.1	6	nan	Morphological trait	Root	RG653	RG433

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus