\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0362600.1

GAATCCTTCTCACTTTACAAGCTCCATTTTATATATATCAGATATTACATGTGGATGTGCAGTTCACATATTGGAACAGTCGCTACAGTTACAGACAAGAATTTACACTCTTTTGTGGATGAATTCAACACGAATCAGCAGCCTTTTGCAGTAGGTACATAGATAGATACCTGACCGTGTAAACAAGTGTAGGTTCATATTACGTACAAAAAAGTCTAAGGACGATACAGGCAAACTGAAGCACTTTGCACGTCAGCCAACATATCGAAGCAAGACGCCGTCGTTCCCAAGCACGTATCCTTTGTTGTCACCAAGGAACTTTACAGAGTAGAGATTGGCTGCGATGTTATCAGCAGCTTTGTCGCGCACCCAGGTCTTCCCGCCATTTGTTGTTTTTAGCAGGACACCACTTCCACCGGCGGCCCATGCTTCATCCTTTGAGCGGTAGCCAACATCAAGAATTCCAAACCCCCGGCTTTGCACTGACGCTTCCTCAAAGTCTTCAGTTATTCCACTTCCTTTACTCAGAAAGAGTCCACCACCGCGCACTAGAAGCCAAAGGCCACCATCTGCTCTCCATCCCATATTCTGTATTCTACGTGCCACTGCCCTGTTGTGTGGCTGCCAAAATGGCTGCCCAGGTTCCCAGGTCAGATAGAAGTTCCCACGGCTGGAGACAGCAACATAACGCCCATCAGGTGACCGGTTCACTGTGTTGAAAGTACCAGTGTAGTAACTCGCTCCGCTAATTCCACTTGAAACTGTTAAGAGTGGCTGAGACAGTCTCTTGCACAGCGGCCTTCCAGTTGTACCCTCGATTGGAAGTAACATAAATTGCTCCCTCGTCGGTGACCATCTCTGCACTTTGCTCACCTGTAGCTTTTATGTAAACCATGTTCCCAGGAAGCTGGGCACTCAAGGGTATTCTTTCCCAGCTGTCTCCAGCATCAGAAGTGTGCAACAAAATTGCAGGCTTGCCAATAATCCATCCTTCTTTGCCCATGAAGCTTACAGAATTGAACCTGTAGTTGAAATCTTCATCCTCGGCGGACGGGATGGAGCGAGGGAACCATGTGTTTCCTCCATTTTTTGTTTCCAATATCGTCTGTCTCGTCCCAAGAAGAAAACCGTGGGAAGGGTCGTCGGGGACGAAGGCGATGTCGAGGAGGACGACGCCGGGGTCGATGGGGAGGAGGACGCGCTCCCACTCGGAGAGCGACGGCGGCTGGTCGGCACGCGCAAGCGGGGTCCGGGGTAGGACGAGGGGACCCACGGCAGCGGCAGCGGAGGCGGTGGCGGTGTCGGCAATGAAGCGGCGTCGGCCGGTGGAGATGGAATCGGTGTGGGCACGGGGGACGAGGAGGCGGCAGCGGCGGCGGGAGGAGGAGAGGAGGAGGTGGAGGTGGAGGTGGAGGGAGGCGGTGGTGGCCATGGCAGATGAGACGTGGAAGCGGGAGGCCGTG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.849823
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa06LNT0362600.1 6 31090203 C T
Osa06LNT0362600.1 6 31090563 T C
Osa06LNT0362600.1 6 31092837 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0362600.1 osa-miR5832 Translation 4.0 13.56 1 21
Osa06LNT0362600.1 osa-miR530-5p Cleavage 4.5 6.464 1 20
Osa06LNT0362600.1 osa-miR1851 Translation 5.0 21.654 1 21
Osa06LNT0362600.1 osa-miR2055 Cleavage 5.0 21.775 1 21
Osa06LNT0362600.1 osa-miR5802 Translation 5.0 7.218 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0362600.1 6 qREP-6 Resistance or Tolerance Other soil stress tolerance nan nan
Osa06LNT0362600.1 6 nan Morphological trait Root RM5814 RM3509
Osa06LNT0362600.1 6 nan Morphological trait Root RM5814 RM3509
Osa06LNT0362600.1 6 nan Morphological trait Root RM5814 RM3509
Osa06LNT0362600.1 6 nan Morphological trait Root RG653 RG433
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus