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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0033400.1

GATAAAGGATGCCTCAATATGGCATTTCTATCTGCAAATGCAAAAGAATGGATGATGTGTTTATACAATAACATATGTAATTGACTGTACAGAGCACAAACAAACATGTTTTGAAAGTTTGACCCAGGTATACAATCGTCGTTGCCCGGAGTCCGGACTTCAAGTCTTGGTAACGGCAGTCTTGCAAACTGGGCAAACGTTCTTCTGAGAAAGCCATTGCTTAATGCAGTAAACATGGTAGCTGTGGCCGCAATCCAGCCTCCCCATCTCTTCATTGGCTTCAAACTCTTCTTGACAAATACTGCATTTCTTTTCCATTTCTGTTGAATACCGGAACGAGGAGTCAAAGGCTGGGTGTTTGACCTTCCTAAGGTTGCGAACTATCTCATCCTCACGCAATCCAGTGTTGACATAACCTATTTTATCTCCAAGCTCAAGCAACTCCTCGTATGTCATGTTATCAACATCAAGGCGCCAATCCTGGTACCGATCATACATGCTCATTCCTCCCAACAGAACTCTTGTCTGAAACATCATGATCTCTTCCTCGAGGCCGACGGGGGAGTGGCGGTACCCGCGCATCCGGCGGAGGCGGCCGGAGGGGAGGAGGTCGGCGCCGAAGAAGGGCGCGACGTCGAGGTGCGGCGGCGGCGGCGAGTCCATGAACGACGACGATATCTGCTCCTGCACGGTCACCCTCCTGGACAGGCACGGTCTCTCTCTGTGCGGCCTCTCCGCGTCGCCGCCACGGCCTCTCCCCACCATCTGGTGCCGCGCCACCACGCAGTCCACGGACGACGCCTCCGCGGCGAACGGTATCCCAGGCGCGCACCACACGTCGG

Coding Potentia
Explanation CPC Score
noncoding -1.18219
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0033400.1 1 28586341 T C
Osa01LNT0033400.1 1 28583473 A G
Osa01LNT0033400.1 1 28584032 G A
Osa01LNT0033400.1 1 28585196 G A
Osa01LNT0033400.1 1 28585205 A C
Osa01LNT0033400.1 1 28585629 A G
Osa01LNT0033400.1 1 28585680 A G
Osa01LNT0033400.1 1 28585248 T C
Osa01LNT0033400.1 1 28585216 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0033400.1 1 QPh1b Resistance or Tolerance Submergency tolerance RZ527 RZ154
Osa01LNT0033400.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0033400.1 1 nan Morphological trait Seed CDO118 CDO455
Osa01LNT0033400.1 1 An10 Morphological trait Panicle/flower nan nan
Osa01LNT0033400.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0033400.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0033400.1 1 qLRC-1 Resistance or Tolerance Drought tolerance RM237 RM302
Osa01LNT0033400.1 1 yld1.1 Physiological trait Source activity RM5 RG462
Osa01LNT0033400.1 1 nan Morphological trait Root RM3475 RM3494
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus