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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0363200.1

ATCAAGCCCAGCTAAAATTGGGGTTTTAATTCATTGATCCAACGGAAATACAACTAGATCAATAATGCATATTCTGCAACAGGAATTGAATTGATCGACCAATCCTGAACAAGATGCAGCAGTACCAGATCCTACTGGCAAAATAGTTTTGCCTCAAAATTCTTTTACAGCTGGTTCTAACTAAATGTTCAGCAACTCTTGGCTAGGCCCCCTCCTATAATTTCACGTGCCTACTCGCTGTAATAATCTCCCTCACTTTCCTCATAAATTCATCATCTCCTTGTCCCTCATGGGGTATAATTTGCAGACAAGACGACAACACCCAAACCTTTGCATCCAGTGCCCTAAGGACATCTGGATCACGGTCATAATCCTTCTCTGTAACCAAGACAACAGCATTATTTTTGTGCTGATACACAAGCTTCTTCAACGTGTCTTGGATAAGCTGCAGGTCATGAGAACTGAAGGAATGGTGATCGCTGAAATCCAACCTTTCAATCTTGAGAGGGCCAATCTCTTGAACAGAATGAATGAAAGCATCTGGGCAGCCAATAGCAGAAACGCATAGCACGATTATACCGTGCAGCACATGAAGAGGAAGCCTGTGCATGGGTTGGTTGACTTGAAAAATATGCGATGGTACCAATTTACTAAAGAAGACTGGACATGTTGCGCCATTGTCGTGGACCGTGGAAAGAATTGTTTTAAGTTGTGGTTGAGAAACCAGGTTAGCATGATGAATGAGGAGAATATGAGCTCTGGTGAGTGCAGTGAGTGGTTCCCTCATGGGTCCTCGTGGAATGAGATGTTTGTTCCCCCAAGGATTGAGGGCGTTGATCATGACAATGTCAACATCTCGAAGCAAGCTGAGGTGCTGCATCCCATCGTCTAGTATGGCGACTCCAATTTGAGCACCATATTTGCGGAGCATGGAGGTAGCGACAGCCGCTCTATTGGGACCGACACCAATCTTGGCGGAGGTATCGGAGAGGCGGCGGCGGAGCATCCTGGATTCATCGCCGCCTGCGTAGCCCCTGGTTAGGATGAGGGGCGAGACGCCGATGCGGTGGAAGGCGCGGGCGAGGAAGTCGACCATGGGGGTCTTGCCATTCCCTCCCCAGGTGAGGTTGCCGACGCTGACGACGGGGACGGGGAGGGAGGTGGAGGTGGAGGTGCGGCGCTGGAGGTGGGAGAGGAGGCGGAGGGCTTTGGAGGCGGCGAAGAGGAGGGGGAGGAGGAGGGCGCGGTGGAGGAAGGGGAGACCAGGGACGCCGGAATCCGGCGTGCCGGCGACCCCACCCACCACTCGCCTCCACTTCTCCATCTCTCTCTCTCTTGCCTTGCCTTGGGCCTTCTGTTTATG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.507331
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0363200.1 7 115525 A G
Osa07LNT0363200.1 7 116531 G A
Osa07LNT0363200.1 7 117184 C T
Osa07LNT0363200.1 7 117506 A C
Osa07LNT0363200.1 7 117814 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0363200.1 osa-miR5512b Cleavage 4.5 19.24 1 21
Osa07LNT0363200.1 osa-miR156c-3p Cleavage 5.0 24.413 1 22
Osa07LNT0363200.1 osa-miR156g-3p Cleavage 5.0 24.413 1 22
Osa07LNT0363200.1 osa-miR166i-5p Translation 5.0 17.728 1 21
Osa07LNT0363200.1 osa-miR530-5p Cleavage 3.5 17.426 1 20
Osa07LNT0363200.1 osa-miR3980a-5p Translation 5.0 19.311 1 21
Osa07LNT0363200.1 osa-miR3980b-5p Translation 5.0 19.311 1 21
Osa07LNT0363200.1 osa-miR5512a Cleavage 4.5 19.24 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus