\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa07LNT0363400.1

CCTTGCTCATAATTAATTTCTTGCAAATCATATGTAGCCTGTAGGGTAGGGGGCAGCAGGCAAACACATATATAAGAATAGCTTAATCGCTAGGTTTGTTTTTTTGAGATCAATTTCATTTTAGGAGAATCATATATATTATCGCTAGGATCGATACCAATGACTTCAATTCATTCAAGGTTGCTCCCATGATTCACGGTGCATACGGCAGCTGTTTGGCCGACGACGACGACGATGATCATCTTAAGCATTGAGGTGGCTCAGCATCCATGGCGGAAGACCTCCGATGCGGAGTTGCACCTGGCCCTGCGCCGCCACCGCCGCCGCCGCCGCCGCATCATTTCTCTCGCCCATCATCACCGGCGGGTAGCTACAGATATTTTGTGGTGGAAGAAGTGCCTGCTGATCCCTCAGCATGGAGGAGGAGGAGGAGCTTGTCTGGGCTTGGGGTTGGGCTTGGGCCTGGGCCTGGACCTGGGTTTGGTCCCACTGCCCTACTTGCTGCTGGCCCCTCACATTCTTCTGCCTCTCCACCAGTTCCTTCTGCAGAGCCTTGTTCTCCTCCTGCAGTGACCTCTCCTTTTTCTGCAGCTCGGAAATGGACTCAAGCATAAGGTGGCTCTTTCTTGATATTATGTGCTTCAATGAACTCTCCAGCTGCTGCTCTAGCTGTTGGAGTTCTTTGAGATTCAGGGATTCTAGATCCTCTCCCATGAGGTGTTTGTGACATTTTTGTATGGTCTCAATCTTTGCCTTAAGTTTCCTGTATTCATGGCACCAATTTCCCTCACTCTCGGATTCAGCTGAAATAAGAGCCTTTTCAGCATATGAATAGCGCTCATAACGTTCAAGGATTTTGTCCATCCTGGAGTCAGTGGCGTACTCGTAGAGCTTGCCCTTGGGGGAGAAGACGATGGCGGCGACCTCGGCGTCGCAGAGGACGGAGATCTCGTGCGCCTTCTTCAGCAATCCATTCCTCCTCTTGGAGAACGTCACCTGCCTGTTGATCTTGTTCTCTATCCGCTTCAGCTGCACCTTCCCCCGCCCCATCCTCGCCGCTCGCCGCTCGCCGGCGGCCGATCCCGATCTCGATCCGACCTAACCTTAGCTGCTACAAGCTAGCTGAAGGAGGAAGACGAACTAGCTAGTGGAAGAAGAAGAAGAGGAGGAGGAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.293137
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0363400.1 7 471547 T A
Osa07LNT0363400.1 7 472129 T C
Osa07LNT0363400.1 7 472286 T A
Osa07LNT0363400.1 7 472701 G A
Osa07LNT0363400.1 7 472949 C A
Osa07LNT0363400.1 7 473000 A T
Osa07LNT0363400.1 7 473786 G A
Osa07LNT0363400.1 7 474168 A T
Osa07LNT0363400.1 7 474385 G A
Osa07LNT0363400.1 7 474680 A G
Osa07LNT0363400.1 7 475872 C G
Osa07LNT0363400.1 7 477238 A C
Osa07LNT0363400.1 7 472805 A G
Osa07LNT0363400.1 7 472173 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0363400.1 osa-miR5832 Cleavage 4.5 17.273 1 21
Osa07LNT0363400.1 osa-miR2873c Cleavage 4.5 14.286 1 21
Osa07LNT0363400.1 osa-miR443 Translation 4.5 14.063 1 22
Osa07LNT0363400.1 osa-miR530-3p Translation 4.5 24.067 1 21
Osa07LNT0363400.1 osa-miR530-3p Cleavage 4.5 17.942 1 21
Osa07LNT0363400.1 osa-miR1869 Cleavage 5.0 18.207 1 24
Osa07LNT0363400.1 osa-miR5081 Translation 4.0 15.618 1 22
Osa07LNT0363400.1 osa-miR5497 Translation 4.5 16.742 1 21
Osa07LNT0363400.1 osa-miR5497 Cleavage 5.0 22.882 1 21
Osa07LNT0363400.1 osa-miR5525 Translation 5.0 20.405 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0363400.1 7 qSS-7a Physiological trait Sterility RM295 RM3831
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus