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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0363900.1

TTACTCTCCAAGCGCGAAAGCGGCAGCATCGAAGGTGTCAGACAGCCCGGTTCCCGTCTTGAAGGTGACCTTCTCCGGCGAGGCCTCGGTGACGTAGACCTCGACGACGCTGAGCCAGAGCAGTAGCTCCTTGGTCTTCACGCCGGCGATCTTCTTCAGCTTCCCCTTCTCGACGAACGCCGTGACCTCACCGGCGTAGGAGACGGTCTGCTTGATCTTCTTGAAGGTGTGCTCGATCTTCTTCTTCCTCTGCACCAGCCACATGAACCCAGTGTCCCGGTTGTAGCCGAACTCCTCGATGTCCTCCAATGGCAGGAGGCCCTTGGGGAGGCCAAGTTCTTCCAGCAGCTCAATGGACTTGTTCCAGAAGCTTAATGGATGGGTCACTGCACTTCAGTCTTCAGCTGGTTCCTCCGGCCTCCATATAGCAATATCTGAAGTGTAAAAGCTCATGTAGGGGACGACGGTATAGTAGCCCTCCTCACACAGCTTCTTCACTTGGCCTGATTTGAGCTCAATTGTGAACACACCAATCTCTGATGAGATGAAAATGGTATGCACGCCTTCGGCGAAACCGGCCAGTTCCCACGACAACGACGGGTTACCCACCGGATTCAGAAAGTCCAACCCAATTACCCAGGATTTTTTCCATTCCTCAATGCCATCATCACCCACATACCGCGACCACAGTAGGATGCTGCAATCTTCCACAGTAGCAAATCCCAGCCCACCATATCCTGATTCCATGAGGATGCCAACCTCATGCCCCAATGGGGGCGGGTCGATCTCCGAGAGCTCATGCCTGCCAATGTCATACCCCAGAATTCTCTTGCCACGCTCACATCTGAAGTAGAGCGTGTCTTGGACGAGGAGGCCAGGCAACATCTCAACATAGGAATCGAACGCAATGGAGGCCTGCGAGCTCCACTCTCCAGTCTCCGACGAGTACACGCACGCCCATGAGTGGTCATCCTCTCCTGTGCCCACGAAGACGACGAGGTAGGGGCCTCCATGGCAGTCAACATGGCGGCAGCCGCGTGTAGCGCACAGCACGGCCCCAGTGCAGTAGAAGTCCAGGTACGGGGGCTGAGGGAAGATGCGGTGGTCGCCGGTGGTCGGGTCCCAGACCATGAGGTCGATGGGATTGAAGAGTTGGAGGAGGAGGCGGCCATGGCGGCAATCGAGCGCCCACCAGTAGGTGGGGAACTCGATGCTCGGTGGAGGGAAATCGGGGTAGAATGGAGAGGGGGAGGTGGTGGCGACGAAGCGGGGGATGTAGGAGCTGTTGCTGCTGTGGTCAACGTTGTGGATGAAGCCGAGCATGGGAGGTGTTCGGTGGAATGCGCGGTAGCGGCGGAGGAAGGCGGGATCGGTGAGGAGTTGACGCCAGCGCTTGCAGACGAGGGAGGCGCGGACGAGGGACGCGGGATCGTCCGGCGGGATGTGGAGGAGGATCTCGTAGGTCATGTCGTCCACCAACTCCGGCGCCGCCGCCGCCATGCTCGCCGTCGCCGTCGCCGTCGCCGGAGCGAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.668072
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0363900.1 7 1085948 T C
Osa07LNT0363900.1 7 1086348 G A
Osa07LNT0363900.1 7 1086771 G C
Osa07LNT0363900.1 7 1087778 C T
Osa07LNT0363900.1 7 1087887 C A
Osa07LNT0363900.1 7 1088388 T C
Osa07LNT0363900.1 7 1088456 A G
Osa07LNT0363900.1 7 1089143 G A
Osa07LNT0363900.1 7 1086980 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0363900.1 osa-miR5833 Translation 4.0 24.499 1 21
Osa07LNT0363900.1 osa-miR168a-3p Cleavage 5.0 20.627 1 24
Osa07LNT0363900.1 osa-miR1874-5p Cleavage 4.0 18.886 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0363900.1 7 qSS-7a Physiological trait Sterility RM295 RM3831
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus