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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa07LNT0364000.1

TGAAACCAAACTGCTGATGACATAATACTGGTATCAACTGAGCAGCATACTGATGGAGTTCACCAACGAGGGCAATTAGCAAGACATGGACGATCATAGATAGATATAATACATAGGCTTCAATCTTTAGACAAGTGTGCTCGGCACATTCTACAGAAGATCATATAAAGGGCCTCAAAGACTAGCTAAATCCTAATATTGACAAAAGCCCAATTTCAGCCTAACCCATAACTTGCATTTGGAGAGGCGAGGTTGGTGTCGAAAGGTATCTCGACTCTTTCCTTCACAACACAGTGAGCCCTGCCATCTTCGAGAACCATTACTTTACCAGGAGGGCATTGGACAGTAGCCTGATCTTTTCCACTGGTTGCCTCCTTACTGAACAAACCTGCCATATCCAATTTTATGCTGTGTCTTCCTATCACTGGCTCGTAACCAGCAGCCTTCATGATAGATACAGCACCTACAACCATTACTGCAGTTTTAGCAAGCCATCCAACAAAAGATCTAATTCCTCCTTGTGAATTGCCGTTTGGCATGCTACCATTCCTGTTCTCCAGCCTGTTTGTCTTTGTAACATCTTGGTTAGTCCCACCAGAACCCAATCCGTTGTGCATACACTTTAACTTGGCCAAGTAACTTGGAGGATACAGATCATCAAGAACAAACGAATTGGTGACATGATTTGAGTACGGAGGTAGCATGAGACCATCATCATGTTCAATTTTTTCACCAGCAAAAGAAGCAGCCTCATGTATTACTTCACAGTCCTGCCCCTTGTATTCTTTGAGCTTGTTAAGAAGACATCCTCGGCTGCGATCAATCTGGCTCAAAATGGTCTCTCGTTCATATCTTTGTTGGTGTTGGAGGTCCTGCAGAGAGGCGAGCTGCCGCTCGAGCGACTCGAGCGCGTTGCTGATACCGACCAGGCTCTCCACCTCCTCCTCCTCCTCCCCCTCCTCCCCATCGCACAGCCGCTTCACCGCCTCCCCGCCCTCGCCCTCGCCCTCCGGCGGCTCCCTGGCTCCGGCCGCGGCGACGCAGGCGGAGATCCTGGAGCGGAGGTCGGAGGCGCGGGCGAGGACGAGGCCAATCTCCTCCCCTTCCATGGCCGCCGCCGCCGCAAGCGGAAAACCCTAGCTAAACCCCCGCACGGCGCTAGGAGAGCGCAGACGCGACGCGAGCTGTGGCGGCGGCGCGTCGTCTTCTCCTCCTCGTGGCTGTGGTGGTGAGGAGGCCGAGGGCGTATCCGAATCCGAAGCTTTGCATGACACATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.43992
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0364000.1 7 1200936 T C
Osa07LNT0364000.1 7 1199418 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0364000.1 osa-miR6256 Translation 4.0 24.119 1 22
Osa07LNT0364000.1 osa-miR5144-5p Cleavage 3.5 15.1 1 21
Osa07LNT0364000.1 osa-miR5338 Cleavage 5.0 22.65 1 21
Osa07LNT0364000.1 osa-miR5502 Cleavage 4.5 19.199 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus