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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa07LNT0364100.1

GGTCTCAACTTTCCTCTATTTTTTTTCCTCTCTGTATCTACAAAAATAAAAAAGAATTTTATCTTTACAAGCGCACAGATCACACTCTGCACAGCTCAATTAATCTCTCTCCCCCCCCCCCCCCACACACACAAACACAATCCTAGATAATTAGGTGTAACATCCTAGAACCAAATCTATCAACACATGAACTAATCATCTTCTTCTAATCTCACTCACTCAGACTCAGCTTGACACAGCTCAAGCCAAGCCATTCATGGCGGACGCCAAGATCGGTGAGCTAGGTGAGGTGGGGGAAGGCGAGGTCCCTGGCGAGCAGGTAGCGGAAGCTGTGGCGGTAGGGGGCCCACTCGACGACCTTGCTCGCCGGCCTGCTCTGGCGGCACCGCTGCACCGCCGCCCTCAGGCTCTCCGGCAGGCACCTCTGCACGGCGTCGACGAGCCTCTCCGGCGACAGCCTCGCGTCCCTGGCGTACGACTCCACCAGCTTCGGCAGCGTCACCCGCTGCTCCTTCCTCACCCCGACCGTCGCCCGGATGTACTCCTCCCTCGCCGCCTCCAGCTGCTGCGACAGCCGCTTCGGGCTCAGCACCCTCACCGCGGGATCGGAATGGCTTCCTGAACAAAGCGCAAAGCGCAAAAGAGGCTCCGATTGATGGATGGCAAAGGCTTGCCATTCCCCTCCTGCTTTGCTCGCTTTGCTTTTGATCCTTGGGTGAAGCAAAGTCCTCAGCCACTGTCCTGGACAGTGAGTGCTACATCCAAGAACCAACCCCTGGATGACTGCTGCATTGATGGTTCTCCCGGCAATCTTGCATTCAGCCTTGACAAGAAGTGATGTCTTCTTCAGATGGTTCTGTGGGATGCCATACTTGAGATATGCATGCATCAACAATGCGTTGTGTATGTTGATCCAGAAAGCAATCTTTTCATCATTTGTCATTCTTCTCAGATCAATGGTCTCCAACCGATACAAAATTAACTTGTAAGTTTGGAGCAAATCTTCTACTTCTCTTAATCTTCGACGATCACGGGAAATCGATGGAACTTCAACCATGGTGTTGTACGGTCCACTGAACTCTTTCTGCCCCTCGACGCGAAACGGGTTGATCAACCGGGAGTCGAGAGTTGCTTCTTTCCTGCAATTGGGGCTCCACATGTCCCCAAGATACTGTGGGGAAACCACACTGGTTGAGGAGAATGATGATGCCGGAGACGACGATGCGCGGTGGTGCACCAGAGGAGGATCAGCAAGCTTGCAGTACACCCCTGCCATGCACCTGACCATCTCCTCAGAGAGGTTGTTTGGAGTTTCAGGGATATGATCAGCTACATTTGTCCCCAGATAGTCAGCTAAGCTTACCACTCCTGATGGTGCTGCTTCTCCTTCCTCCAAGAATGAGAAAGGCTGAGAGTGGCAGGAGCGAAGAGCCCTCGCGAGGCTGTCCTCGGACGGCGAGATCCTGGACGAACACACTCCCCGGAACGAGAGCGCGGACTGGCTGCGGAGGCCACTGTACTGGTCGGACGAATCCGTCGTCTTCCTCGGGCACGTCGACGGCGAGCAGTCGTCCGCCGCGCCGCCGCCATTATTCCACCTCTTGCTCACCGGCGCCGGCGGGCAGCTGTAATGGATCGCGTCGCCGCCTCTCCTGCCTGGAGCCGCCGCCGCCGCCGCCTTCGCCTTGGGCGTCTCCTCCAGAAGCTGCGAGCACCGCGAGCTCACCGACAGCCTCGCCGCATCTGAACACGCCACTGTCGCTGCTTGCTGCTGCTGCTGATCAAATGCTTTCCTGTACAGTGTCAGGAGATACTGCTCCAGGTGCTTGATCTCTAGCTCCAATGTCGCGACCTCCCTAATCAGCTCGTTCGCAGGTTGAACCTTTAGCATTGGGCTCTCGAGCGAGAGATTGACAGGAGCAGGATGATCAGGATCAGGGCCCAGTGCTTTCTCCAGTGCGCCGCGCACCACCTGCTGATCCTTGAGGTGACTCTCCAGCTGCAGAATCTCTTTTCTCAAGGAGTTTTGTGCCTCACTCCTGGATGGCTGAATTCCCTTCTTGGTTTCACTCTTCAGATGAGGGTTTGAGTTTCTACCAGGCAGCTTAGGTTGATTGCATGCTTTCAGTGAAGAACACAACGCATCTTTAGCATTCTTATCCTCCAAATCACTCTTTGAACGATTGTGCTTTGCTGTGGTATTGGAGGGCTTCATTGCTTTGGGCAAGGATTTACGCCCTTTCTTCTCCAGTATCTCCATCTCTGTTCTTCAAAAGAACACCTTCTGGAACCAATCAAGAAACAATTATTCCCAGCTTGCTCAAAACTTTGAGGAGAGTTTAAGAGAGAAAAGAAGGGAAGGAGAGAGAGCTCCCAATGATGCAGGCGAGCAGAATGGTGGATTCAGAGAGCAGAGAAGCCACACTAAAATCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.683886
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0364100.1 7 1203561 T C
Osa07LNT0364100.1 7 1203575 A C
Osa07LNT0364100.1 7 1204547 A G
Osa07LNT0364100.1 7 1204784 G C
Osa07LNT0364100.1 7 1205165 T A
Osa07LNT0364100.1 7 1205614 T C
Osa07LNT0364100.1 7 1206596 T A
Osa07LNT0364100.1 7 1205517 G T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0364100.1 osa-miR166l-5p Translation 3.0 16.292 1 21
Osa07LNT0364100.1 osa-miR172d-5p Cleavage 4.0 20.605 1 20
Osa07LNT0364100.1 osa-miR419 Translation 5.0 11.601 1 21
Osa07LNT0364100.1 osa-miR2867-5p Cleavage 4.0 20.566 1 22
Osa07LNT0364100.1 osa-miR2919 Cleavage 3.5 5.143 1 19
Osa07LNT0364100.1 osa-miR2926 Cleavage 4.5 20.793 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus