\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa07LNT0364300.1

CATCACCATCTCCACCTCTCTCTCCTCTCTCACTTTCGCTCGTTCTCCTCTCTGTGTCGCTGTCTATAGCTGCTGTGCCGCGCCTTCTAGCGCCGCCGTCGCCGGCGGTGCCTTGCCGGAGCTCCGCCCGAAGTCGCCGCCGCCTCCCCGGCCGTCGGCTGCCGAGCAGAGCCTCGCCGCCGTGGCACATCGCTGCCTGGGACTGGGATAGAGCAGCGCGTGGAGGAGGAAGACAACCTCCTCAGCCGCTGACAACCGGGTCCCACGCCCCTTTTCCTCCATCTTGCCACTGACAAGCCGGGCCCATGCCTTTCCCCCTCCAGTCAACCGCTGACAGCTTTGTTTTCGCGTTAAGAGCCCGAGTTCGAGGAAGCTCCGGACGCCGCTTTCGAAGGAGAAAACCCCAACCCTGTGCAAGAGTTTGAAGACGAAGACGCCGACTCGACCACCAAGGAGTATTTCCAGGAGTAAGCCGAGTATGAAGACTTTTAGATGTTTTGTGCCTAGCCCCAAGCCTTGCCTGTGGAATAAGTTAGTTGCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.995093
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0364300.1 7 1503584 C T
Osa07LNT0364300.1 7 1503630 A G
Osa07LNT0364300.1 7 1504029 G A
Osa07LNT0364300.1 7 1504570 A G
Osa07LNT0364300.1 7 1504572 G A
Osa07LNT0364300.1 7 1504713 A G
Osa07LNT0364300.1 7 1504911 G A
Osa07LNT0364300.1 7 1505046 A G
Osa07LNT0364300.1 7 1505255 A G
Osa07LNT0364300.1 7 1505420 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0364300.1 osa-miR396a-5p Cleavage 5.0 21.063 1 21
Osa07LNT0364300.1 osa-miR396b-5p Cleavage 5.0 21.063 1 21
Osa07LNT0364300.1 osa-miR396c-5p Cleavage 5.0 21.063 1 21
Osa07LNT0364300.1 osa-miR156k Cleavage 4.5 1.866 1 21
Osa07LNT0364300.1 osa-miR5494 Translation 5.0 14.645 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus