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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa07LNT0364400.1

TGCCCACAGGTGACCTCAAGAATGAACATGCCAAAGGCAAATACATCTGTAAGAGGGGTCGCTTTGCCACCGCGTGCTAGCTCTGGAGCTAGGTATCCTATGGTGCCAACCACTCGTGTGGTTTCTGGATCAGTACCATGATCATACAACCTTGCGAGACCAAAGTCACCTATCCGTGCATTTGTGTCGTTATCGAGGAGTACATTGCTTGCCTTAATGTCTCGATGAATGATAACTTTCTCGCTCTCTTCATGAAGGTAGAGTAATCCAGATGCTACACCTTTGATGATTTGGAATCTTTGAGTCCAATCTAATGTAGGCTTGCCCTCTTTACCATATAGGTATTTGTCAAGGCTTCCATTTGGCATATAATCATACACTAAGAGAAGTTCACCTTTTCGCCGGCAATATCCCAGTAACTGCACAAGATTGCGGTGTTGAAGGCAACCAATACTAACAATCTCTGCAATAAATTCTTTCATGCCTTGGGTTGAGTCATGTGACACCCTTTTCACAGCTATATCCAATCTAGATATAGGGAGCACCCCCTTATACACACTTCCAAACCCTCCTGTACCTAGTAGGTGCTTATTTTTGAATCCTTCTGTGGCATCAAACAAATCCTTGTAACAGAACCTCCGTGGCCCATACTCGACTTCCCAATCTTCGCGTAGCTCAGCATATCTTAGATTCCTCCGCATGCACAGAAAAATGGTAGTGCCCGCAGAGAGGAGGAACACCACAGCTACTATTGGCAAAATTGTCTGCAATACCTTGGACCGAGCCTTTTAACCTAGACGAGGAAGCTTGGCAATGTCAATTGATGGAGCCGGGCTGTTCATGCCGAAGCTCCAACCTAGCACATAGTGTTTTCCACTGACTGTTCCTGTTGAAGATGAGAAGCCAATATATGCCGAGTCAGTGAGCACTGTTGATAGATTGTAGGTAGTAGAAAGCAGTGGCTTCACAGGTTTTTCCACATTGAGGGGGGCCATGGTCACATTGATCTGTGTGATTTCTCTATCATAGTTTACCCAAACTTGCATCGCCTTCTGGCTAATGAGTGTCAAATTCTTAAAGTCACCACTCTTATCATCGTAAAAGCCAGCATCACGAGATTTCATGGAGTAAAGACTGTTGATATTGATGCCAATGTGGTTATTACTGATGTCTTGTAAGTCATCATTTTGGACAGTATCGAGCTCGATAGCAAAGATGTGGTTGTTTGGGTCTCCATTGTTCTTGTTGTTGAAAAGGCCCAAATACTGGGTCCAGAACGCACTTGCGAAATTCTTGCTTGGAGCAATGAAGAAGGCGAGGCCATGCCCACATGAATCAGGGTAGTCACAGAGGATAGCAAACACAAACGATATGGAGAAGGAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.361003
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0364400.1 osa-miR5798 Translation 5.0 14.443 1 21
Osa07LNT0364400.1 osa-miR166k-5p Cleavage 5.0 22.578 1 21
Osa07LNT0364400.1 osa-miR1429-3p Cleavage 4.5 12.412 1 21
Osa07LNT0364400.1 osa-miR169r-3p Translation 4.0 18.486 1 21
Osa07LNT0364400.1 osa-miR1853-5p Translation 5.0 14.427 1 24
Osa07LNT0364400.1 osa-miR2122 Cleavage 4.5 17.628 1 22
Osa07LNT0364400.1 osa-miR2275a Cleavage 4.0 18.128 1 22
Osa07LNT0364400.1 osa-miR2275b Cleavage 4.0 18.128 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0364400.1 7 nan Resistance or Tolerance Drought tolerance RG528 RG128
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus