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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa07LNT0364500.1

CAAACAAAAAAAAAATCTGAATTGACCTCTCAAAATAAGCAGTTGATGACCAGTTTACTCGATCAGATGGCTCGTTATTTGTCAAATGTCAATGGAACTTCAGAACTGGATGGATGTAGCCAGAGTAGCAAGGAATCAGAGCATACGCAGGGACCCCAATTGTTTCTTTCATAATCAGACGACAAGGACCCATTTCATTGACAGGAGTTGAACAATGAGTAGAAAACAGAGTGCATGGCTGATGCAATTGGACAGACATTGCTATGCTACTCAACATCCTCCAGAATTCTCCACAAAGAACATATGCAGAGCACTACAACCTATACTAACCACAAGCATCAACAGCCAGACTAAGAACATCTCCAAGGGACTTGCTATCTCATTCTCCATGCCAAAAGAACAAAAGAAGAAGAAGCAAACATGCAAAAACAGGTGCTCCAACAGATTGGTTTTTTGCATTGCTATTCCATCTGTCTGGCTAAATGTAAATGAGAGAATCAGGTGGCTAAATCTGGCAGCCCCTGTGACTCTCCATCCTGATGATCATCTCCATCTTCTAGCAGAGCACCGAGCTGAGGCTCGAGGTCCCATGCCGCCTCGGAGGCGCGTTTCTTGAGCTCCATTGAGCTTGGCTGCCTCGTCCCGCGCATTGCCGGCTCCCCCCAGCTCTGGCTCCTCCGTCTGCTGCCGCCTCACCCCTACCAGGGCCGCCTCTTCCCTTGGTGGCGTGTCCTCCTGAGCTTCATTGAGCTCAGCCGCCTCGTCCCACGCATAGCCGGCTCCACCCAGCGCCAGCTCCTCCCTCTGTCGCCTCCGCCTAGTTCTGCCTTCAGATCACTGTCGTCGTCGTCGTCTCCTGGTTTGGCAGTGTGCGTGTACTAGGAGTATTGTTGCAGCCATGAATTCATCGTCGTCATCTGAAGACGACGACTCCAACACAATTTGCATGGATAAGCTCAAGCCAAAGTGATTCATTTGTGGTGTGGAGGTGAAGAAGCAAACAAGGAAGAAGAATGTTGTGGTAGCCTGGTAGAGAGGTAGAGAAGGAGCCTATATATAGTGTTGCAAAATAGCTGTTGGGAACTAGCTGTTGTAATATGGAGTCTGTTGGAGTGTGTTGGAATATGGAGAGCGAACTAGCCGTTGGGATATGGAGAGTGGAATATGGAGAGTCTGTTGGAGTGTGTTAGAATATGGAGAGCGAACTAGCCGTTGGGATATGGAGAGACTGTTGGAGTGCACTGGAATATGGAGAGGGAATTCTGTGGAGAGATGGAGAGCCAAATTTGCCAATTTGGTACCTTTCTAGAAGTCAACAATCAGCATTCAGCAACTCCAAAAGGAAAAACCATTCCAGTTAAATGCACAGACTGCCTCCCAGGAGTGGCTTCCCGCTCGCTCACCGTAATCCCACTTGAAGTTCCACACGACGTTCTTCTTTCTGCTCTGCTCCACGTCGTTGAGAACACCGGCGAATATAATGCTGGAGATCGCCGGCGGTGGTGGATCCTAGCAATTCCGGCGGTGGTGGATCCTAGCAATTCCGGCGGCGGCGGCGGTGGCGGCGGCGGAGGGGGAATGAGCGGCACGGCTAGGGTAACCAAGGCAACCTAGAGAGAAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.844532
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0364500.1 7 1780750 T C
Osa07LNT0364500.1 7 1780608 A T
Osa07LNT0364500.1 7 1781234 A G
Osa07LNT0364500.1 7 1781361 T G
Osa07LNT0364500.1 7 1781439 A G
Osa07LNT0364500.1 7 1781537 A G
Osa07LNT0364500.1 7 1782752 C T
Osa07LNT0364500.1 7 1781402 T C
Osa07LNT0364500.1 7 1784584 A G
Osa07LNT0364500.1 7 1784721 T G
Osa07LNT0364500.1 7 1786151 C T
Osa07LNT0364500.1 7 1785463 A T
Osa07LNT0364500.1 7 1783158 G T
Osa07LNT0364500.1 7 1783471 G A
Osa07LNT0364500.1 7 1786264 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0364500.1 osa-miR1861o Cleavage 5.0 11.745 1 22
Osa07LNT0364500.1 osa-miR168b Translation 4.5 24.262 1 21
Osa07LNT0364500.1 osa-miR435 Translation 4.5 14.259 1 20
Osa07LNT0364500.1 osa-miR814a Translation 5.0 15.604 1 22
Osa07LNT0364500.1 osa-miR814b Translation 5.0 15.604 1 22
Osa07LNT0364500.1 osa-miR814c Translation 5.0 15.604 1 22
Osa07LNT0364500.1 osa-miR1861a Cleavage 5.0 11.745 1 22
Osa07LNT0364500.1 osa-miR5489 Cleavage 4.0 20.804 1 21
Osa07LNT0364500.1 osa-miR1432-5p Translation 5.0 19.357 1 21
Osa07LNT0364500.1 osa-miR396f-5p Translation 4.5 16.661 1 22
Osa07LNT0364500.1 osa-miR5147 Cleavage 4.0 13.135 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0364500.1 7 nan Resistance or Tolerance Drought tolerance RG528 RG128
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus