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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa07LNT0364600.1

GCTTAACATATTACATATCTGACAATAAAAAATGGCCTTCCAGAACTGTTGTTGATACAAACCAGAAGATAACAAATCAAATTTCAAATACTGAGATGGCTGAATATGGCGGCCCTTGTTCTACAAGTTGGGTCATCTCAGATGTTGAGGTAAAAGATATCAGTGATTCCATTAGACAAAATGGGGTATTGCATCAGCTTCACAGAGCAAACTACAAGCCTATACATCTGCTAAAAAAATATGGTTACATCATTTTGTTTTGGCGTCACAGGATTGTGTACATACTATCTTCTACCACCATCTTTCTTCGAAAATATGCGCAAGTTTGCAGTCTGCCGGCGCCATTCATTTATAGGGACTGCTGGAAACCCGCCATAGTCACCGGGTTTCTGAATATCCTTTGTCACCGAACTATTTGCTGCAAGCCGAACCTTTGAAGCAATGGAGACGTGATCCCGAATTGCCACCCTACCACCCAAGGTTACATAGTCCCCCAATGTTGCAGAACCAGCAATTCCTGCTTGTCCACAAATCATGCAACACTTTCCAATTACTACATTGTGACCAATCTGAACAAGATTGTCAATTTTGGTTTCATCTCCAATTACTGTATCTCTCCAACTCCCTCTGTCAATACATGTATTTGCACCTATCTCCACATGATTTCCAATTTTTACATGCAACATCTGCAGTTTCTTCTTAACCTGTCCATCATCCCCCACAAAGAAACCAAAACCATCTTGACCAATGCAGGCGCCATTGTGGAGAGTGCAGAACTCGCCCACCGAACAATTGCTCAAAACAACATTGTACCAGATCCTGGTTGACTGACCGATGGACACGGAGGGCCCGACCACGGCTCCCGAGCCGACGACGACATCCTTGCCAAGAACGGCGCCGGAGTGCACGACGGCGCCGGCCTCCACCACCGCGGTGGGGTCAACGGACGCGGCCCTGTGCAAGACGCCCCCGCCGTTGTGCCACGGGACGAACTCCCCCGAAGCAACCGCCGCATCGGAGGAAGCAGCGGAGGCGCCGCCGAGGAACCGCGCGAGGCGAGCGGCGTGGCGCGGTGGTGCGGAGAGCCGGAACACCGCCGCCGCCGCCATGGGAGCCGCGGTTCTGCGCAGAGCGGCCGCCATGTCTAACAACGGCGGCGATTCAAGGTTTGAGCG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.84422
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0364600.1 7 1833178 A T
Osa07LNT0364600.1 7 1834447 C T
Osa07LNT0364600.1 7 1835288 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0364600.1 osa-miR5834 Translation 5.0 12.004 1 21
Osa07LNT0364600.1 osa-miR816 Cleavage 5.0 22.811 1 20
Osa07LNT0364600.1 osa-miR5486 Translation 5.0 20.517 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0364600.1 7 nan Resistance or Tolerance Drought tolerance RG528 RG128
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus