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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0365200.1

GATGCATCCATGCAGAAGCGCTAAGGCGCTGCACATACACGCCACGCCGGCGCCGCCGACGCTATGCGCTGCGCAGGGACGCAGGCCCTGCGCCGGTGGCCGGTGGCACATGCACCCACTCAATTCTCGGTGACTTGCCGGCGGCTCGCAAGCAGGCGCGCCGTGCAGTGGAGATTAAACATTCCCCCATCGAGCTGATGTCGCAGGCGGAGATGATCGTGCTAGGCGGTGAGTACGATGAATAATTTCCTCCAATCCTGTTGCTAAATCGGTCGTTCTAATGGATGATTGGAGTACCTCTTTTCTCCTCAACAATTGAAGTGCGATGAAAATCAAATCGCATCTGCTTTCTTGAAACATAAACTTGGGCATGTCTAATCTACGGATCGGACTATCCTCGTATTTTTTTATAATCAAAACATATGTTTTACGGTGCACATGCCGGGAGCGAGCCCCAAATTATAAAACAAGGGAAGGAGATGGGAGAAAATCTCTGGTGCTGAGGCGGCTGACAGAGGAGGAGACGTAGGCAGGCAACTCTGCTGCGTGCTCTGATCTGCTTATAGTTCCACAATCCCATATCCAACATCTACACAATTTACAAGCCGTCACCGGGGCGCACACATGTACACGCCGCCGCCAAGCGCTGCGCCAAGATGCAGGCCCTGAGCTGGTGATGATAAACATTATAGCTACACAAATATTTGGGAGGAATCGGGAGAAGGCAAAGTAATCGTCAAGGAGTCTGCTTCATCATCGCTGGTGCAACTCCAAATTAATCATTCGCCTTCTGTCGAGCCGCGCTTCATCAACATAATTTCTCCGTCAAGTTATTTGTCATCGACAACACAATGGCGCCGTAGTGCTGTGCAGATATTATGCATAGCCCGACATTGTCTCCTAGAGGGAGCAAATATACACCGTAGCGTTGTGCAGTTACGCAGTCCGGACGGTAAAACAGTAAAGTGGAGTACTGGTGAATATGTCATGGATACGTTGTGAACTTGTAGCCATGGATATAAGTATCCCCAACGGCGCATGCACATGCACACGTCATCTTTGTCAAGCAATTAACATGAGCTGCAAATAAATACAAGGCGAGCCTGACCCTCGTGAGGGTTGGACCGTCTAAATTATCAATATCAAATATTGGAT

Coding Potentia
Explanation CPC Score
noncoding -1.33844
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0365200.1 7 2280116 A G
Osa07LNT0365200.1 7 2280225 G A
Osa07LNT0365200.1 7 2280745 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0365200.1 osa-miR396e-3p Cleavage 3.5 20.634 1 24
Osa07LNT0365200.1 osa-miR2118a Translation 5.0 20.868 1 22
Osa07LNT0365200.1 osa-miR2118b Translation 4.5 20.868 1 22
Osa07LNT0365200.1 osa-miR2118c Translation 5.0 20.868 1 22
Osa07LNT0365200.1 osa-miR2118d Translation 5.0 20.868 1 22
Osa07LNT0365200.1 osa-miR2118f Translation 5.0 20.868 1 22
Osa07LNT0365200.1 osa-miR2118j Translation 5.0 20.868 1 22
Osa07LNT0365200.1 osa-miR2118m Translation 5.0 20.868 1 22
Osa07LNT0365200.1 osa-miR2118n Translation 4.5 20.868 1 22
Osa07LNT0365200.1 osa-miR2118o Translation 3.0 20.868 1 22
Osa07LNT0365200.1 osa-miR2118p Translation 4.5 20.868 1 22
Osa07LNT0365200.1 osa-miR2118q Translation 5.0 20.868 1 22
Osa07LNT0365200.1 osa-miR5337a Cleavage 5.0 19.007 1 21
Osa07LNT0365200.1 osa-miR5488 Translation 4.5 22.027 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0365200.1 7 nan Resistance or Tolerance Drought tolerance RG528 RG128
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus