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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa07LNT0365300.1

TTCAGATCACACCCAACATAACCCCAACTAGTGCACTCTACACCTTGCCACAAATTGAAGACAATAACCTTTATAAGGTTTAACCCTCACGCGCTCACGACTTCAGCTTTGCCAATCTTCTCAATATATAGAGCTTTGAATAATCCTATCCAGCTTTGCCAGCGCCTCTGATGTCTCATCTCAATGCCAGCCACCATAACTTCCATGTGGCTTTCTCCCTTGTTTCAGTTTGCTCGAAAAGGTATTTAAGCATCCCTTTCCCTTGTTGGTCTTGATCAAATTTAATATGATAATTGGGTTTCTGTATCTCATCTACCAAGGTCACCAAAATGAAGCTGAGTCGTTTTATAGTCAGTGTTTGGTTGTCTTGTGATGTTTGGCTTAATAGAAAATTTAGCTTCTTGAGACCACAGAAGATGTATGGATCCTCCGCATTGCACAACAGATATTATATTTGATGGCATTTTATCTTGGGTGTCTTGAAACACAATTTGCTTTGTCTCAACATCATCGGCGGCAATTTTGATGTGTTTATACAATTTACGAAGAAGATGATGACGAGGGAGATCAGGACGAGGATCAACTCGGGATCCTCGCGTTCCCGCCGCGGGCGTAATTGGCGGCTTGCCCTCGCAGCGAAACCCTAGGGCTGGCTCATCCCCCTCTCCGCTCCCACACTCGCCTAGCTTCTTCCCCCTCCTGATCCGCCATAACGAAGGGGAGGCCGAAGAGGTCGGTGCCGCCGGGGACGCCTCGACGTCACCACCGATGGCGCCGCCGCCGGCGAACCTTCGCTTATCGGGAGTTTCGCCGCCGGCGGAACTGAAGCGACGGAGCGGCGGAGGAGGTTTTG

Coding Potentia
Explanation CPC Score
noncoding -1.36152
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0365300.1 7 2262547 T G
Osa07LNT0365300.1 7 2262861 C T
Osa07LNT0365300.1 7 2263301 A G
Osa07LNT0365300.1 7 2264025 A G
Osa07LNT0365300.1 7 2265210 G A
Osa07LNT0365300.1 7 2265383 T C
Osa07LNT0365300.1 7 2265705 T C
Osa07LNT0365300.1 7 2265794 T G
Osa07LNT0365300.1 7 2265962 G C
Osa07LNT0365300.1 7 2266926 C T
Osa07LNT0365300.1 7 2266980 C A
Osa07LNT0365300.1 7 2267585 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0365300.1 osa-miR5829 Cleavage 4.0 13.299 1 24
Osa07LNT0365300.1 osa-miR414 Translation 4.0 23.134 1 21
Osa07LNT0365300.1 osa-miR1860-3p Cleavage 4.0 17.442 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0365300.1 7 nan Resistance or Tolerance Drought tolerance RG528 RG128
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus