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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa07LNT0365400.2

TGCAATTCAACAGGGAGTACATGGACATAAATAATGAAAGGTTCCTCATTTTCAGAATTTTCTTACACTTTGTTGAGAGAGTGCATAACCAAAAGGTACAGGCTAGAGTATATACATTACATGTTTTGGAACAAACCTAATACACAAGCAAGGCTACTTATTTGGCTACAACAACAGACTACTTAGGCCAAGCGCCAGAAAAAGCGATTGGTGATCTCATTCATGACATAGAAAAGAAGATTGAAGGTCAAAAACCACAAAACTATACAAACCGGAGTCCTGTGATCAGTTGGAATCATCGAACCCGCCTGATCTGCCGAAATCTGATGTTCCAAAACCATTAGGGCGTCTGCTGTACCGTGTCGAACCTGAATCATCAAAACTCCTAGAGCGTCTGTTGCCATTTCTACTGAAATTGCCTTCTCCAAAGTCACCAAATCCGAATCCATCAGGCTGCTTGGAACTAGACCTGCCAAAGGCATTGGAGGGTCGTCTAAAATCTCCAAACCCACTGCCATATCTTGAACCAGCATCGCGTGATCTCCCACCACGATTAGGGGAACTGCCAAAGCCATCAAAATCACCAAAGCCCCGGGAACGGCCTTCTCCAAAACCACCATAGCCTCCTCGTCCGAAAGAGGAGCCACCGGTTCTTGGGCTTCCAGCTAATCTAGAGCGATTGTCTCTCACAACATTAAACATGTCTGAGGCCTCATCTGCAACTTCAATCTTTGGAAGCTCTGTGAATTTGCATCCTATATCTTGCTCAATGATCCTTACAGCTCTAGCTTGATCATTTGTGTATATTAAAATTGCACTTCCTTTCTTCCCTGCTCGTGCAGTTCGTCCAGATCTGTGAACAAATAACTCCGAGGTGTTTGGGAGTTCGTAATGTATAACAAGATCAACATTGGGTATGTCTAATCCACGAGCAGCAACATCGGTTGCTACTAGGATATTAAAGCGGCCATCTCGAAATCCTGATAGTGTCCTTTCTCTCTGATTCTGTGAAATATCCCCATGAAGCGCCTGACATGCATAGCTCCTGCCCATAGCATATGCTAATCTATCTGCCTCTCGTTTAGTTTGAGTAAACACAATACATTTTCCACCATTAGCATGCTCCTGTGGAAGTGTAGAGAAAAGAGTCGTTAACGGTGCAAACTATAAAACACATCATACATTCAGAAGAGTGCTCACTTTGATCAATGGACCAAGAATTGATGGCTTCCCATAGTGCTCAGAGGCAATTGAATAAAGAGAGATTCCTTCAGGTAATTTCTGGTCCTCATCACCAACTAGGTCAATAATGATTGGATCTTTCAAGTACTTGCTTGTGATTTTTCTAATCCAACTGGGCATTGTTGCAGAGAACAACATACTTTGACGGTTCTGTGGCAAATTCTCCATGATCACCTCAACATCTTCATCAAAACCCACAGCCAACATCTGGTCAGCTTCATCCAGAACCACGAATTGGATCTCAGAAAGGTTTAAAACACCTCTTCTTAAAAGATCAATAATTCGACCTGGTGTTCCAACCACAACATCAACACCATAATTAAGAGCTCTCATTTGATGACTGATGGGAACACCTCCATAGACACAAAGAGAGTCCAAAGGAGCAGATTCCTTAAATTCCTTCTCAACTTGTCTAGCAAGTTCTCTAGTAGGTGCGAGAATTATGGCTAAAGGATTTCTACCACTCCTGCATGCACCAAACCATTCTTCTCATTGTGACGAAGAATCCTGTCCATGATAGGAATACCAAAAGCCAACGTTTTCCCAGTTCCAGTTCTTGCACGTCCAATCATATCTTTGCCTTGCATTGCTGGATCAAGGAC

Coding Potentia
Explanation CPC Score
noncoding -1.08852
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0365400.2 7 2228027 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0365400.2 osa-miR396a-3p Cleavage 5.0 19.265 1 20
Osa07LNT0365400.2 osa-miR396b-3p Cleavage 5.0 19.265 1 20
Osa07LNT0365400.2 osa-miR167d-3p Translation 4.0 9.425 1 22
Osa07LNT0365400.2 osa-miR417 Translation 4.0 19.011 1 21
Osa07LNT0365400.2 osa-miR417 Translation 4.5 17.179 1 21
Osa07LNT0365400.2 osa-miR1425-5p Cleavage 4.5 16.741 1 21
Osa07LNT0365400.2 osa-miR812f Translation 4.5 14.641 1 24
Osa07LNT0365400.2 osa-miR2878-5p Cleavage 5.0 15.787 1 24
Osa07LNT0365400.2 osa-miR5074 Translation 5.0 11.071 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0365400.2 7 nan Resistance or Tolerance Drought tolerance RG528 RG128
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus