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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0365600.1

GAAAGAAAAATAAGCTCTTCACCCAAAGGAATATATATGTTTTTTTTTTGTTCCACAATTGAATCATGATCTTGCAAGATGGTTGGAAGACTGTGTTCCAATCCTGCAAGATGGTTGAAAGATTGTGCTCCAGTCCTAAAGATGAGAGTGAGACCAAACAGACCGATATAGGCATTTTGTGATCCGATGGAGCCATTTGGATCATGAGGCTACACATTATCTGATCATACTCTATGCAGTACAAAAGTGCAACCCCATCTGGATAGTACATATCTGCTGCTAGCAACATCAGTTTGAGGTTAATTTAACTCCTTGACAGATTGCTCAAGATACGCTAGTTTTCTCTGCTTTTGTTTGGACGCAAGCTAGAAAGTTATCCAATGTCATCAGCTCACTTGTCTCCTCCTGAATGTCTTGTACTCTTATAGGCTGTAGCTGTGGTGCCATGGAAATCAGCCATTTGGCAGGAGAAGAGGCCATCAAGGGGTTGAGATCAATCCAAAAACAATGGTAACAACGACCAGAGATTATATGTATTCTTGCAGCTGCATATAATACGGATTAAGTCCTCTTGAGTCTTGATAATAATGGAAGGCAGGTCTTCTGGGAAGAGGAATTTTGTCCGTCACCGATGGCAGTGGGTGTTGGACAATGTGGCGTAAGAAAAGTAAACTAGCGTTGAAGTGCTGAACTAATCTGCATGCCGTTTCTGACAGCAAAATACTATGCCATTTGGAGCACAAATGGTTTGAGTTTTTTTGTGAGTAGAGCTGGAGCATATGCATGCTAGACTGCAGCACAGTTTCGACATGTCACTGATGCAAATCATGCAACTCTTCGGACATACAAAAGGCAAAACCAACCAGCATTGAATTTGTCACCATAATTGAGAGTATGCTAACCCACTGCCGTCGGTAACATCAGCCGGAGAAACGCCGATCAGTAACATCCTAGTTGCAGACTTGTAGGTGACAGCAAGAGAAATCCTTCTCCATTGTCACTGTGTCAGTTTGTTTGTTTAGCACTAGCTGCTGTT

Coding Potentia
Explanation CPC Score
noncoding -1.16024
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0365600.1 7 2464588 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0365600.1 osa-miR159a.2 Translation 5.0 14.107 1 21
Osa07LNT0365600.1 osa-miR528-5p Cleavage 5.0 21.58 1 21
Osa07LNT0365600.1 osa-miR2866 Cleavage 5.0 14.792 1 20
Osa07LNT0365600.1 osa-miR2918 Cleavage 4.0 13.409 1 21
Osa07LNT0365600.1 osa-miR5076 Cleavage 5.0 16.154 1 22
Osa07LNT0365600.1 osa-miR5152-5p Translation 4.5 14.264 1 21
Osa07LNT0365600.1 osa-miR5340 Cleavage 4.0 15.044 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0365600.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0365600.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0365600.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0365600.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus