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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa07LNT0365900.1

ATCGGATTTCACAGGTTACTGCTTTTAAAATAAGTCAAGGAAGCAAAACTATGCACATTCTTCATTCACATTCCATCTCCATACAAACTTTGTTTACAACCATGTCTAGATTAGATAGTAACTCAACTTAAAAGGTAAAAAGAACCAAAAAAAAAAAAACAGCCACAGGCCATTCCTTAGTAGGTTTTCCTGGCTGGTTATCTACTTTATACTATCACTGAACTTTTGGTGCCAAACTGCCAATCACGGTGACCTCCGATGCTGGATCTCATCGCCTGCGATTATGCTACTCTCCGGCTTCCACATCACATCTTTCAGGCCATTGGAGATGTTGTGGTAGAACTTATGGAATTCAAGAGTGTCGCCGTTAGATTTGCGGAGCTCAACCATGTACAGCGAGGGCGTGACTTCAAAAACCTCTGTTGCAATTGCAAGCTGACCTTTCCTTCCTGGATTCTCTCCTTGCAACTTCAGCTTGTAGTTGCGCTTCTGTACATTAAAGCCCATGGGTCCAGCAGCTGCTTCAATTTTCGACAATATCTCGTTTGCAGGCAGCCTTGATGCAAATCTTGTTTCTCGCTTCACAGAACCCGATTGCTTTTCAAAGAGTGTGCCAAGATTGAGACCCTGAGATGTAGAGATCAACTCAAAAGCATTCATCACTGATGGCCTCTCTTCTCGCCTCTCGACAACAAGCTGTGTTTGGTCCCCAGATTCATTAAAAATAGAGTTGATATCATCCAGGTTAACATCTGCTGTCTCAAACCTTGGAGGCTGATATCCCTTCTTGAACCACTCATTGTTGATAAGCTCTGCGATGGTAATCCTGGTGCTAGGATTAGGATCTAGTATTTTCTTGATGAGCTTCTTCGCACTTGTAGAGAACCAAGACGGGCAACTGAAGTCTGCTTTGAAGATCTTCTTGTAAAGTGACATGAGGTTTGAGTCTTCAAATGGAAGGTAGCCTGCCATGAGGACAAAGAGAATCACTCCACATGACCACAGATCAGCCTTGGCTCCATCATATCCTTTGTTGTTGATAACCTCGGGAGCAACATAATTAGGAGTTCCACAGGTAGTGTGCAACAGACCATCCTCTCTGACTTGTTGAGACAGTGCACTCAGCCCAAAATCTGATACTTTGAGAGTGCCACTAGCATCAAGCAGAAGATTTTCGGGCTTGAGATCCCGGTGATAGACTCCTCTGCTATGACAGTAATCGACAGCGTTGATCAGCTGCTGAAAATACTTCCTTGCATCATCCTCTTTCAGCCTCCCACGCGAAGCAATCTTGTCGAAAAGTTCACCACCGGTGACAAGCTCCATCACTATGTATATTTTGGTCTTGCTGGCCATCACCTCATGCATCCGGATGACGTTGGGGTGCCTGATGAGCTTCATGGTGGAGATCTCGCGCTTTATCTGGGCGATCATCTTGTGCTTGAGGACCTTGTCCTTGTCGAGGATCTTGATGGCGACATTCTCGCCGGAGTCCGCGTTGCGGGCGAACTTGACCTTGGCGAAGGTGCCCTCGCCGAGCGTCCTCCCGAGCTCGTACCTCCCCACCCGCGTCCTCCCGCCCGACACGCTCATCCTCCTCCTCCTCTGCTTCTTCCTCTTCCCCTGTCCCTCTCAGATCGACGACGCCGGCGAGTGGGCGAGCGGCGGCGGGCGACTAGGACCGCTTCTTGTCGCAGGGCCTCCACTGGACGAACAGCTCCGCCTCCTGCTCGCCGGCCTGCCGCTGCCGCATCGATCCTCCTCTCTTGGGACTCTCTTCTCCTCACAACCTCGCGGTCACGGCCGCAGGCATGGGATGGGACGAGCGCGGTGGTCGTCAATGGCGGCGGGTGAGGCGGGAGGTTGCAACTT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.626868
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0365900.1 7 2645622 T C
Osa07LNT0365900.1 7 2644758 C G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0365900.1 osa-miR1425-3p Cleavage 5.0 17.721 1 21
Osa07LNT0365900.1 osa-miR169r-5p Translation 4.5 11.494 1 21
Osa07LNT0365900.1 osa-miR1847.1 Cleavage 5.0 22.621 1 21
Osa07LNT0365900.1 osa-miR1877 Cleavage 4.0 6.45 1 24
Osa07LNT0365900.1 osa-miR2094-5p Translation 4.0 20.862 1 21
Osa07LNT0365900.1 osa-miR3982-3p Translation 4.5 21.164 1 21
Osa07LNT0365900.1 osa-miR2863c Cleavage 5.0 18.187 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0365900.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0365900.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0365900.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0365900.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus