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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa07LNT0366000.2

TCGGTATCACTACAACCACAGGCAGTTTAAAATGACGGCAACTTGGTCTTACGTACATAAGAGGTGCTTAGTTTCAACACAAAATACGGCACATACACAAGCGTTGGCCCTTGCATACATATCCACCACATCTTCGGCATAAACAGAAGGGGGAACTGAACACCCCAGGGGGTAGTGCCCAGGCTAGTTAGGAGTACGTGGTGAATACTTGTTTTCCATCTCCAAGCCGACAACATAATACTCCCTGAGGGCCTTCCTGTAACTACGAGTATACCGGACACAGGAGACACCTGCAAGACCCACCCCAAGGACAACAGACCCCATTATACACCTTCTGTGGAACCTGTTGTACCTTATTATCTCCGCTATTTCCTTGCTTGCAGCTTCCATTTTAGCTACTTCTTCATGTAGCTGTCGAATTGTCTCGTCCACATTCTTCACAACCTTCATGGAAGACGCAAGCTCTGTAGTACTTCCATTGGTGTACTTTCCCTGGGACTGGGAGGCGTTGGCGGAGAGGGATCGAGGGCGACGGAGAGCGGCGGCGGCGGGGGCGGGGGCCCGCAGCTTACCGGCGAGGTAGCGCATCGCCATAGCAGACGGAGATTGATCGGCGGCGGCGGGCTAGGGTTTGCTCAATTGGGGACGAGGCGAGGCGACGATGCTTGATGCTTCCTCGACT

Coding Potentia
Explanation CPC Score
noncoding -1.17841
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0366000.2 7 2712710 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0366000.2 osa-miR528-3p Cleavage 5.0 18.593 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0366000.2 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0366000.2 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0366000.2 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0366000.2 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0366000.2 7 qSNC-7 Resistance or Tolerance Salinity tolerance C1057 R2401
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus