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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0366600.1

CAAGTAATAGGTACACCTTAATGAATCCAATATTTTACTTCATATTACACAGAGAACATATTAACTGAATAAATATAGGAAGCAAAACAGTTGCACTTTAGATTTCTGCACAATATATTACAGCAATAACTGAAACTCGGAGCACCTCTATGTCTAATAATATTCTATTGGCTATGGCTCATATCCCATTTTAGCATCTCTTGTGTCAAAATTTTCAATTGGACAAGTACAATTTAGATTGGAATGCCGAATGGCAGAATAAGTAAATCAGTGCAACCATCAATTAGATACTAATAACTGGCAGCTGTCTGCAAGTTGCTCTCTTCCGTTTCAGCTTCAGAAGGTTCTGAGGTAATGCTCTGCTCTGTCTCTGCATCAGATGATTCTGAAGCAGTTTCTTCCTCCTGTGACTGCACTGTGCTAGGAGAACCAGCTGTTGGGTTCTGTTCCGCCATACTGAGCCTCAGTGGCCTTCCTTCCAGTTCCACTCCATCCAATGCCTCCAATGCAGCCTGTGCATCCTCTGCAGTCCTGAAGGAGACGAATCCGAAACCCCTGGACCGACCGGAGTCGCGCTCGAAGATGACCCTAGCATCAAGCAAGCCGGGCTGCCCCTCGAACGCCGCCCTCAGAGCATCGGCACGCACACCCCACCCCAGGTTCCCGGCATAGATCTTGAATGTGCCGTCATCGCGCCTGTTCTCCCTTGTGGCCGCCGCCGATCCCACCGCCCTCTCCCCTCCCCGCGGCACCTCCGGGTAGTTCACCCTTGCAGTCCTCCCTCCAAGCAGCTACACATAAGGCACACAGCCACAATGCCACAAAATTGACCAGATTTCATAACTTCATTTACTCCAATAGCTCAATTTCAGTGAAATGGAGCAGAATTGCTTTGAATTGGTGTGTGAAAAAAACTCACGGCCCCATTGAACATCTGGATGGCGGTGGCAGCCTCCTCGGCGGTGGCCATGGTGACGAAGGCGAAGCCGCGGCTCCGGTCGGTGACCTTGTCATAGATTATCTGGACGTTGTCGACCCTGCCGGCCTCGGAGAAGGTCTGGGAGATCTCGCCGGAGGTCATGGTGTAGGGGAGGTTGCCGACGAAGAGGCGGCCGGGCTCTTGCCCGAGCGCCGGCCGGCTTCTCGGCGGGTAGTATCCGCGAGGCGCCGCCACCGCCGCCGCCTCCTCCTCCTCCCCATCTTCCTCTTCCTCCTCCACGTACTCCTCCCCCTCTTCTTCCTCCTCGTTGGCGTACTCCTCCTCTTCCGAAGAGAACTCTCCACCGGCGGCGGCGAGGGGAAGCAGAATGCGGCGGCGATGACCGGAGGCGACGAAGAGGTTGAGGACGCCGACGCGGTGGCGGTGAAGGCCCTGGAGCCGTAGGTGAGCGGGAGGCAGTGGCACACGCTCGGTGAGGGCCGCGGCGGCGGGGTGTAGCAGCGAGCGGAACGCGACGGCGGCCATGGCCGTGGAGGAGGAGAAGATGGCGGGAGAAGCGAGGAGTGGAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.122282
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0366600.1 osa-miR5796 Cleavage 4.0 20.493 1 21
Osa07LNT0366600.1 osa-miR5805 Cleavage 5.0 21.805 1 24
Osa07LNT0366600.1 osa-miR319a-3p.2-3p Translation 4.5 10.705 1 20
Osa07LNT0366600.1 osa-miR319b Translation 4.5 10.705 1 20
Osa07LNT0366600.1 osa-miR171g Translation 4.5 12.497 1 21
Osa07LNT0366600.1 osa-miR408-5p Translation 3.0 20.793 1 21
Osa07LNT0366600.1 osa-miR1429-3p Cleavage 4.0 15.522 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0366600.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0366600.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0366600.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0366600.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0366600.1 7 qSNC-7 Resistance or Tolerance Salinity tolerance C1057 R2401
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus