>Osa07LNT0366700.2

CCAATCACAAAAACACTTTCCAGTGATGAAATTTTCTGAAGCAACCATCATACAGAAAAGGAAGTTAAATAAGTTACCGTCAAGGAACTAAAACACATACGAGTTGTTCTTCAAATTCACAATCCTAAGTTGTCCAAAAACCAAAACCAAACTAATCAGGGCTGACTTAGCTGCTCCAAACTCCAAAGTCGTCCAAATTGTGTAGAGCTTGACTGGCATGAACAATACCTTCAGAGTGGCTCAAATCTTAATCAGGAAGAGGAATTGGCCTTACGGGTAAGGCGAACACAATCTGGATAAACCAGCTCACAAACCGAGAGCGTTTCGACCTCCTCGCGACGAATTTCAGAAACATCGACAACATTGTTGTGGTCTTCTCTGCAGAGATATTCAATGGCGACCTCATACCCATCAAGATACTGAAACCCTTCCAAGGGTGACAGCATCGATATACAAGGAAGGGCGAAGAGCGGCTTGGGGTCGACCTTCATCGCCCTGATCATGGCGGAATTTCTGAGAATGTGCAGTGACAGCTCCAATTGGTCTTTCATGCCGATGAATCCACTTATGTGTACAAGCCTGAGATGGGCATGAGGCTGCGGTGGAAGACTCCGTAGCTCGCCATGAGCTTCTTCGCGATACCGTTGATGGTGAAGGGGCATCCACATATGTAATTCAAACTTTTGCAGTAAAGGAGCAGCTTCCAGTAGGCAGGCAAAGTCAAGAAGATCAATCTTCTTTTCCGTCACAGGGTGTCTCAATTGCAACCTCAAATGCTTTAGATACATAAATTTGATATGATTTTCTGGCAAAATAGCCCTCTCGAGTTCTGAACATTGCAAACTCAGCGTCTCGAGATGGAGCAGCGTGCTTGGAAGATTGGTGAAGATATATCCAAGAGAGGAACGAGCGTGTTGCAGCTTCATGCAGACATTCGTTAGCAGCAATGGCCCAGGAGGTGACAACGGTATCAGTGTGCCCTTGTACCCAAGTTTCGTCAGGCCAAGATTCAACTCTATCTCTTTAAGCAGATGGCAGCTCTCGACATGCAAATGTTTAAGCTGGTTCCAAAGGTGCGATGTCGACAATCTTGTGAGCTTCCCACAATCAACGATACCAAGAAACTCCAAGGCATTGCAGTTGGAGATCAAAATCTGCATGTTTTCATCAGTAATATTTGTGTGTTCTAACTTGAGCCTTTTAAGGTTCAGAAAGGCTTTGAAATCCACAGGCGGGTTCAGAGAAACAGCACTAAGCCTCATGGACAGCAAATATGAACTGTCCATAGCACCGAAAAACTTAAAAGGGAAATCATAGGGCCCCTCTCTAGGATACCGGGATTTGAAATCAAAAGTAAGATCTTTCGTTTTAGTAGCACTAACAAAGCTGAGCCATCTGTTTATGTGGTCTGCATGTTCATTATCCAACTTACCTTGGATTGCTATTTTCTGAACACTTAGACCACTGTGTTGCGCAAAGACTTGACTGACTCTCTCGATGAACATTTTCATCCTAAGCCGTGCATCATGTGAGGTCGAAGCTAATCTTGGCGACATCGAGTAGAAGGAGAATTCCAAGTTTACATGGGAACACCAGATTTTTTTCCAGTGGCTTGATAATATACTCGTCCTTGCCGCCTCTTTTATCGGCAGCCGGGATATGATACCAATCAATATATCCGTAGGTAGGTCATTGAAACGAATCACTGGTCTTTTCCTTTTGGTCGTAGTAGCATCATCCATGTCTTCTTCTTTTTTGGTTGTATTAGTTCCAATCCGTTTCAAGCTTCGTTTTGTCTTTCTCGTAGCCACCAAACTGCTGCCCACAGCAGCAACACCAACACGTTGACCTAGCTGAGATTTGGTCGATCGGCAGGATTCGTACCCGCGGCAGAGGAAGATGCAGAGCACGGAAGCGGCGGCGCAGCCGTTTGGATGAAGAAGAAGATGATGATTTGTATATATATATATATATATATATATATTAGAAGATGATGAGCACCGACTTGACCTCCAACTCTAATCCGAAACGAACACTGAACCGATAGTCAACTTTCAGCAAGAGGCAGGCATAGCGCCGCCGGCAACGGACAGCCGGATCCGGCGTGGCGTGGGGCTAGGTCGCCGGCCCGCCGCCTGGGGCTCGTCAGATCTTGATGACTGTCGTCGCCCCTGCCCGCCGTCGCCAGCGCCTACTGCCGCCACCGCTTAGAGGTGGCCAAAT

Explanation	CPC Score
noncoding	-1.10741

Transcript ID	Chromosome	Locus	Ref	Alt
Osa07LNT0366700.2	7	3153923	C	G
Osa07LNT0366700.2	7	3154482	C	T
Osa07LNT0366700.2	7	3155345	G	A
Osa07LNT0366700.2	7	3156249	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa07LNT0366700.2	osa-miR7692-3p	Translation	5.0	20.646	1	24
Osa07LNT0366700.2	osa-miR396a-5p	Cleavage	5.0	20.421	1	21
Osa07LNT0366700.2	osa-miR396b-5p	Cleavage	5.0	20.421	1	21
Osa07LNT0366700.2	osa-miR396c-5p	Cleavage	5.0	20.421	1	21
Osa07LNT0366700.2	osa-miR160f-3p	Cleavage	4.0	19.267	1	21
Osa07LNT0366700.2	osa-miR528-3p	Cleavage	4.0	23.917	1	21
Osa07LNT0366700.2	osa-miR1876	Cleavage	3.5	17.312	1	24
Osa07LNT0366700.2	osa-miR1880	Translation	5.0	19.764	1	24
Osa07LNT0366700.2	osa-miR2866	Cleavage	4.5	14.625	1	20
Osa07LNT0366700.2	osa-miR2918	Cleavage	5.0	21.218	1	21
Osa07LNT0366700.2	osa-miR2931	Cleavage	4.0	13.042	1	20
Osa07LNT0366700.2	osa-miR5500	Cleavage	3.5	14.148	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa07LNT0366700.2	7	gp7a	Morphological trait	Panicle/flower	R1440	RG128
Osa07LNT0366700.2	7	gw7	Morphological trait	Panicle/flower	R1440	RG128
Osa07LNT0366700.2	7	tp7b	Morphological trait	Culm/leaf	R1440	RG128
Osa07LNT0366700.2	7	yd7a	Morphological trait	Panicle/flower	R1440	RG128
Osa07LNT0366700.2	7	qSNC-7	Resistance or Tolerance	Salinity tolerance	C1057	R2401

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus