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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0366800.1

CTCGAGGAGGCGGCGGTGCAGCGAAGACGCGACGGCGGGGGCGGCGCGACCCGGAGGCGATGGCGACGGCACGGCGCTCTCCTCCGGCCGCCATATTATCTCCGATTGCACGTGCACCTCCTCCTTCCTGGGACCTTGTACCCTCTCCTTCCTAGGATAGTGCTGTGCTTCAGGAAGATGGCAAAGAAGAAGAACCCAATTGTCTTTATGGATATTTCGATAGGTGATGAACCTGAGGCCATTCCCAACCCAATGACTAGGATGGTGTCTATAGCATTAAATAAGCTGCCACCTAGGATGAAAAATGATGTGGCAAGTGAATAAATGAGGAAATAGAAGGAAACCATGTCTTGCATGAGACATGGTTTCTACACAACATCCAAGACATCATGTGAGATAAGTAACATTAAATTTAAGTATAGAATAGTTGTGTTTGCATTGGAAGATTAGTGTTTAGTACTAGTTTCTTGATGATGTGGAGTCTATGGAAACTATGTCTAGTGTCATGGGTTGGGAATGACCTGATGAAAGAATGTTTTTTGAGGTGCCATGTGGCTCTAGCTATGTGCTTCATTATTCCTGTGTTTTGTCAAGGCTGAATTGTGCTTCCATACATTCTAATTTTCAAAGAGAGAAACTAGAAGAAGGTTGAGGTGGTCATTCTTTTCTACATTCACCATATATCTGTCTATCCACTATATATGATTTCTGCATCCTCTTAAAATTCAGGCAACTCAAGATTCACATATGTTATACACTTGAGTTTGGAACTTTGCGCATTATAATGTTCATTGCATTATGTCTGGTAGAAGAAAAAAGAATAATTGGATGGTTGTAGTTTTGTTTCTTCTCTATTTCTGAGATAGGTAAACTGATGTCTACTAATTGATTTTCCTTGTAGGCTCCTTGAAATTGACTGGTAGGATGTTCCATAGAATTTTTTTGATGGTAGCAGTTTTCTGATGGTGTCATTTAGACTAATTAACCATCCAATGAATGGTCTACTGATGTGTCATTTTGGGGATGTTGGGAGAAGTTTGGATTTTGATGTGCATTTGGACTAATTAATCATCCAAGTTGTCGGCAGATGGATTCAACTTGCTGAGTGTAAGGGAATGGAATCAGAACAATCTTCTTATTATACTGTATAAATATCTCCTGTACTTTTGGCTGGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.992961
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0366800.1 osa-miR5815 Cleavage 4.5 19.535 1 24
Osa07LNT0366800.1 osa-miR408-5p Translation 4.5 20.47 1 21
Osa07LNT0366800.1 osa-miR1442 Cleavage 5.0 16.697 1 20
Osa07LNT0366800.1 osa-miR2093-3p Translation 5.0 15.969 1 20
Osa07LNT0366800.1 osa-miR2873a Cleavage 5.0 11.77 1 24
Osa07LNT0366800.1 osa-miR5083 Cleavage 3.5 14.638 1 20
Osa07LNT0366800.1 osa-miR5150-3p Translation 5.0 16.532 1 24
Osa07LNT0366800.1 osa-miR5157a-3p Translation 5.0 16.532 1 24
Osa07LNT0366800.1 osa-miR5157b-3p Translation 5.0 16.532 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0366800.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0366800.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0366800.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0366800.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0366800.1 7 qSNC-7 Resistance or Tolerance Salinity tolerance C1057 R2401
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus