© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa07LNT0367500.1
GCGAAATGTTCTCGCATGCCCTTATGGCACGGATCGATCGGACAGCAACACATTGCTGAGGTTTAGTATGTCAACTGTGATACTTCCTCAATTTTAAAATGTATGTAACTGTGATGTTTCCTCAATTTCAAAATGTATGGTTTCGTTGACTTTTTCATAACGTTTGACTATTTATCTTATTTATTTTTTTAAAAAAATACTATTTATTTTTTTTGATTTGTTTTAAATAAAATATAATCTTAACTTATACTTTTATATACTTATACTAAAATTTTTGAATAAGATGAATGGTCAAACGTTTAAAAAAAATGAACGACGTCGTACATTTTTTACATTTTGAAAAGGACTACACAGCAAAAATCTTGTCAACATAATCACCCAGTCAAATACAATTGGTTTCCATTGCTTCTTTCTCCTGGAACTCAGGTGGCCGGCGCCCGCTCCATCGTTCACAGCAGCGGGGGCCGGGCGTGAATTATACTGCCAGCATTATGAAGGCCGCCATGATGGCACCAGTAAGTGAAGCGGTAACAATGTACCCTATTCCAGATAGCTGAGAGGCCACGGCAAATGTCATGGCAGCAATAGCTGCAGAAACCACCAGCCTCAACGCGGCCTTGCTGTTGGCCGCCTTGGCAAACACCCCAGCATAAGCGACAAGAACGATAGTACCCAGAAAACCAAACGTCACGACCTTGGCGTACTCAGGACCATCCTTAAAAAGAGGCCGCGATGCAGCACATAAAGGTAAAATACTAGCTAATATTGTCTGCAAAGTTTGTGCAACAACGACCCGGTCATCTGGAGTCACAGGAGTTGGACTAGCTTCTCGCGCAGAAAATATATTGGGAGTGGCTTGCAGTAGCAGATCAATATCGATGGCAATGTGCTCCTCCCCATGAGCGAAAGGAGCGCCGCCACCTGCACCACCTCTAGCGAAAGGGTGTAGTACTCGTTCCCCTGATGAGCTGTGGCCAAGTCGTATCTCGTTCTGCTGACAACTGACGGCCATAGATTCCTCGCTTCGGAACAAAACGTGCCGGCCGGCATCTCCTCCTCCTGGCGATGAGCCGAAGATATCACGACGCGTTCCTGAGTTGTGACCAAGTGTACGTGGCCGTAGTATCGGATTGAGCGCATGGAGTACCGCCATAATTGTCTTATAAACCAGCTGGCATTGTTCATCCCAAATGCCTACGGGCATAGGGTAAACGAAGGTATTTAGTAATAGCTTTCTCAGCATCATCACCAACATGATCGCCAAGCGGAGATGAAACGCTATGGAGTTTTCTCGTCGACGAGACGACGACGCAGGATCGTCCGTCTTCTCTCAGCTGGGTCGGCCATCTCCATGGATATCACCCTCTCCCCTCTCCTCAAGTTTTTGCAGAAACACTCAGGAGTCTCGGAGTAGTAGAGTGAACTCAACTTTTGCTTGCCCGAACTAACGGAGTAGCTAGGCTATGAATAGCACAGGAAGGCTAACGCAACGCAACCGCTAAAAGCAC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa07LNT0367500.1 | 7 | 3625452 | A | G |
| Osa07LNT0367500.1 | 7 | 3621479 | A | G |
| Osa07LNT0367500.1 | 7 | 3624677 | C | T |
| Osa07LNT0367500.1 | 7 | 3621379 | T | C |
| Osa07LNT0367500.1 | 7 | 3622347 | T | C |
| Osa07LNT0367500.1 | 7 | 3622353 | T | C |
| Osa07LNT0367500.1 | 7 | 3622382 | A | G |
| Osa07LNT0367500.1 | 7 | 3623469 | A | C |
| Osa07LNT0367500.1 | 7 | 3623522 | A | G |
| Osa07LNT0367500.1 | 7 | 3624200 | T | C |
| Osa07LNT0367500.1 | 7 | 3624966 | T | C |
| Osa07LNT0367500.1 | 7 | 3626132 | T | C |
| Osa07LNT0367500.1 | 7 | 3627756 | A | G |
| Osa07LNT0367500.1 | 7 | 3627914 | T | C |
| Osa07LNT0367500.1 | 7 | 3628837 | A | G |
| Osa07LNT0367500.1 | 7 | 3629437 | T | G |
| Osa07LNT0367500.1 | 7 | 3623668 | A | G |
| Osa07LNT0367500.1 | 7 | 3622841 | C | T |
| Osa07LNT0367500.1 | 7 | 3622948 | T | C |
| Osa07LNT0367500.1 | 7 | 3630090 | C | T |
| Osa07LNT0367500.1 | 7 | 3622995 | T | C |
| Osa07LNT0367500.1 | 7 | 3623009 | A | G |
| Osa07LNT0367500.1 | 7 | 3623136 | C | A |
| Osa07LNT0367500.1 | 7 | 3630040 | A | G |
| Osa07LNT0367500.1 | 7 | 3630062 | A | C |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa07LNT0367500.1 | DTM_#DNAt_MULE_japo_Os1127 | Chr7 | - | 3629716 | 3630091 | 375 |
| Osa07LNT0367500.1 | DTM_#DNAt_MULE_japo_Os1617 | Chr7 | - | 3622654 | 3623391 | 737 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa07LNT0367500.1 | osa-miR812s | Translation | 4.5 | 8.484 | 1 | 24 |
| Osa07LNT0367500.1 | osa-miR5799 | Translation | 3.0 | 8.484 | 1 | 24 |
| Osa07LNT0367500.1 | osa-miR5835 | Cleavage | 5.0 | 12.469 | 1 | 24 |
| Osa07LNT0367500.1 | osa-miR171b | Cleavage | 5.0 | 19.782 | 1 | 21 |
| Osa07LNT0367500.1 | osa-miR171c-3p | Cleavage | 5.0 | 19.782 | 1 | 21 |
| Osa07LNT0367500.1 | osa-miR171d-3p | Cleavage | 5.0 | 19.782 | 1 | 21 |
| Osa07LNT0367500.1 | osa-miR171e-3p | Cleavage | 5.0 | 19.782 | 1 | 21 |
| Osa07LNT0367500.1 | osa-miR171f-3p | Cleavage | 5.0 | 19.782 | 1 | 21 |
| Osa07LNT0367500.1 | osa-miR440 | Translation | 4.0 | 22.849 | 1 | 24 |
| Osa07LNT0367500.1 | osa-miR5511 | Cleavage | 5.0 | 15.93 | 1 | 21 |
| Osa07LNT0367500.1 | osa-miR812s | Translation | 4.0 | 23.249 | 1 | 24 |
| Osa07LNT0367500.1 | osa-miR5508 | Cleavage | 5.0 | 23.249 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa07LNT0367500.1 | 7 | gp7a | Morphological trait | Panicle/flower | R1440 | RG128 |
| Osa07LNT0367500.1 | 7 | gw7 | Morphological trait | Panicle/flower | R1440 | RG128 |
| Osa07LNT0367500.1 | 7 | tp7b | Morphological trait | Culm/leaf | R1440 | RG128 |
| Osa07LNT0367500.1 | 7 | yd7a | Morphological trait | Panicle/flower | R1440 | RG128 |
| Osa07LNT0367500.1 | 7 | qSNC-7 | Resistance or Tolerance | Salinity tolerance | C1057 | R2401 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)