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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa07LNT0367700.1

AGGACTGGTGATAAGTTCGATTTTCAAATTACATGACATCGAACAAATACCCCTTTCATCCATAATAGAGCCAGTGTTACATATGGAGTTAACCATCAAGTCGAATTATTAGCATAGTACTTTTTCTGAACAAAAAGGAAAACTGTGGTGGAACATGTCCATTGTTCCGGTGTAAAGCAAAGAAACAATCGGATGCCAAACGTGTGGCAACTAAAATCAGCAGTCAAGCTCCCACAGAATCTTTGCGGCATCTTCAGGAAAAACTGGATTAATGTAGCATCCGCTTCCAATCTCAAATCCACCGATTAAACTCAACTGGGGCACTATCTGAAGGAACCAATGTGTGTAAGGAAGACAGGATGATGAGACTCCAAATGGTGCGCTGTGTATCATAAAGTTGAATGGAGGGTCGTTGAGCTGCTTAGACAACTTTGCCAGCATGGTCCTCAATAAAGACCCAAGATCCAGTGCCGTATCCTTGTCTATTTCATGGAAATAGGAACTATGCTGTCTGGGAATAATCCATATCTCAAAAGGATACGATGCTGCAAAAGGGACAATTGCAGAAAAATTGTGTGTTTCACGGACCAAAATATCCTTGGACTGGAACTCACAAAGGCTGCACTTCCCCAATCTCTCGAAAACCTCCTTCATGCAGTTAAGCCGGGTGGTAACAGAGGGAGGGACAAAGGGAGTTCCTAACATCTGGCTATGTGAGTGTGCCATTGAGGCCCCAGCAGATGCACCATGGTTCTTAAATACCTGTACATACTTCACCGCAGGGTGCTCCATGAGCTGCCGCACGCGGCGCGCGTACGCGAGCAGCACGTCGCCGACCCCGGCCGCGTCCAGGTCCCACAGCCGCACGTCGTGGCGCGGCGTCTCGATGACCACGTCGTGGAACCCGAACCCCACCACGGCGCGCTCCCCGGGCGTCGCCTCCCCCTCCCCCGCCTCCTCCGGCGCCGGCGGCTCGGCGTCGCGCCGCAGCGCCGGGTACAGGTTCTCGATGACGCGGATCCGCCAGGGCGACGCGTCGGGCGGCGCCGGCACGCGGAAGATCTCCGGCGCGCACTCCGACTCGCGGCCCTGGCAGAAGGGGCAGGACGGCTTGGGGGCGCCGGCGGCGGCGCCGGCGCCGGGGCTAGGGTTGGCGGGGGCGTGCGACTTGAGGTCGGTGGGGCGCCGCGAGCGCGCCGGCGAGAAGACGACCCAGCGGCCGAACACGGCGTCGCGGCGCGCCTCCGATGTTCTCGAAGCTTCCGCCGCCATCGCTGAGCTCGGTGCGGCGGTGGCGCCTTCGTCTCTTCTTCTCCACTCTTCGAGACGGTTGTGCTGCCG

Coding Potentia
Explanation CPC Score
noncoding -1.33484
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0367700.1 7 3763966 T G
Osa07LNT0367700.1 7 3766429 G T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0367700.1 osa-miR5822 Cleavage 4.5 14.051 1 21
Osa07LNT0367700.1 osa-miR1866-5p Cleavage 5.0 15.237 1 24
Osa07LNT0367700.1 osa-miR5490 Cleavage 3.0 17.708 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0367700.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0367700.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0367700.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0367700.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0367700.1 7 qSNC-7 Resistance or Tolerance Salinity tolerance C1057 R2401
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus