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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0368000.1

TGGTGGTACAAAAGTTTTTAGTTGTGCAGATCCCTGCGCTGCAGCTTTGCTCCAATTTCCAACTAGTTGAAGATTACAACATATAAATATTGCATTTGTGCTCACCATTTTAGCTGGCAAGATTGGGAAATGGGTACAAGGATGTAGGCTAAGTACTCCATTTCTCACTGTTCTGAATTTTTGGTGAGATGCATGGAGACAACCTGCAGACCGTGGGGTAATGCTGCATATGTGTGGTGATGAAACATGAACATTTTTGCAGCAGGAAAGACTGCTCAAATATTGCTCATGATCACCAGTTCTGAACTTCTGATTATACAGCAAAAATAGGGCTCTCCAAACCCTGCTAGTTTTTTTTTCTCACCCATACAACACATGCATCCATTCAAACCAAAAGAATTTAGGTAGAAGAATGATAATCTCACTCATAACTCATAAGCAGGTAGTGGCCAAAATTTAGGCTGAAAAAAAAAAGAAAAGATCCAATCAATTCTTCAGTTTAAATGACACATCCGATGCTTCATCGATCCTTTTATCGAAATGCACTTCGTGGTAGCGGCATTGGCTGCTGCAGAAGGCTTTCTCATCTCTGTGCTGCATGAAGAGGCGGCAAGCGTCGCCGCCGGCGGCGGAGCTCTCGACGACGAGGTCATCGAATATGTGGGTCATCTTGGGGTTGGGTCCCCGGGCGATGACGCAGGTGTAGTCCTCGGCGAGCTCCGCCTCGCCCTGCGCCGTCCTCGCCGCCGCCGACGACAGCGGCGACCGCTGCACCGGCGAGAGCAGCGCCAGCTGCGCGTCCCGGTTCTTCACGCCGAACTCGATCGGCGAGCTCGGCGGCGGCGGCATCTCGCCGCCGCCGCCGCCGGCGAGCACCCTCTCCTGAGGCAGCTGCACCCGGAGCCGCATCATCCCGAGCAGCACCCTGCCGGTCCTCCCGTAGCACCGCCGCTCGCCCTCGCCGTCGACGAGAACTCCGGCGAGCCCGGTCACCTGACCGCCGCCGCTCAGCGGGTTCCTTGGGCTCGCGCAGGGATGGTTCTTGGCCTGGTCGTCGACGGAGAAGATGCTCCTCGGAGAGAAGCCCTGCAGCGACGACGACGACGACGACGACGACCTCGGCGAGAGGAGCCCCCCGCCGCCATTGGCGAGCTCGCTGCTCAGAGGTGAGGGAGCTTGCAGATCACACCTCTTCTTCAGCATTTGAGCTCGAGATAATTAATCCAGCAAGTTTTAATCTAACCTTACTGCGATCTTAAATTATTAATCCAAATCTACTGCGGATTAATCTGTTGTTCTTGGGATGGTGCCAATGAGCAAAAGAGATTCAGAAACGATTAGAAAAAGGAAAAAAAAAGATCAGATCAAACAAATGTTCAGAAAAAAAAAACCAAACTGAACCACCAAAAGATTTGAGCAACCAAACAAGATTGACAAAGATCAAGTCTCTGCCATCAAACAAGTAGAAGAAAAGATGTTCTTCCTCTCGAGGAAATAAAAAGAAGAAATCAAAATTTCAAGAAAAGAGAGGTATTATTGATTGATTAGTGAGAACAGCAAGAACAAGGCTGCGGATATGATATTGCTGTCTGCTCACTCTCTGCTGCTGCTGCTGCTGCTGTGGAGAGTGATGAGGCTATGGAGGATAGGAGAGGGAGCAGTGAGCTAGCAGAAGGAGATTATGCTGCTCGCTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.524581
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0368000.1 7 3959461 G A
Osa07LNT0368000.1 7 3960333 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0368000.1 osa-miR156a Cleavage 5.0 10.697 1 20
Osa07LNT0368000.1 osa-miR156b-5p Cleavage 5.0 10.697 1 20
Osa07LNT0368000.1 osa-miR156c-5p Cleavage 5.0 10.697 1 20
Osa07LNT0368000.1 osa-miR156c-3p Cleavage 4.5 22.278 1 22
Osa07LNT0368000.1 osa-miR156d Cleavage 5.0 10.697 1 20
Osa07LNT0368000.1 osa-miR156e Cleavage 5.0 10.697 1 20
Osa07LNT0368000.1 osa-miR156f-5p Cleavage 5.0 10.697 1 20
Osa07LNT0368000.1 osa-miR156g-5p Cleavage 5.0 10.697 1 20
Osa07LNT0368000.1 osa-miR156g-3p Cleavage 4.5 22.278 1 22
Osa07LNT0368000.1 osa-miR156h-5p Cleavage 5.0 10.697 1 20
Osa07LNT0368000.1 osa-miR156i Cleavage 5.0 10.697 1 20
Osa07LNT0368000.1 osa-miR156j-5p Cleavage 5.0 10.697 1 20
Osa07LNT0368000.1 osa-miR168b Cleavage 5.0 21.147 1 21
Osa07LNT0368000.1 osa-miR5076 Cleavage 4.0 21.484 1 22
Osa07LNT0368000.1 osa-miR5517 Translation 4.0 18.27 1 21
Osa07LNT0368000.1 osa-miR5523 Cleavage 3.5 13.864 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0368000.1 7 qSNC-7 Resistance or Tolerance Salinity tolerance C1057 R2401
Osa07LNT0368000.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0368000.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0368000.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0368000.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus