\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0368200.1

CGTCAAATCTGGTCATACATTAGTGTAATCTGGTCTCAAAAAATATATCTAAAGAGAGATAAAGTAATATAATTACACAATCATAATTTGCCCAACTAATACATCCGTAGTGACGACGATAGTGTGGACTGGTCCCACATGTCATTCAGGCGGTACTCGTAATAATTTCAGTAAGATAAAATATCTGCGGTTCACTTCGCCATGCATATCACAAACCTTGCAAGTTGCAATCTTGTATACTATAGTATGAGATAAAAACAAGAGAGAAATTTGCAAGATTAGTATTTATTTATGACTTTGTTACTTCTCATTATCCTGGCTAGCATCAAAAGCTTGCAGAGATCAGACCCAAGATTTGTCTAGCTGGCTGCTCCAGACTGATGATAATTAATTGGCTCCATATAGCTAGCTAGCTTCTCCTGAACATGCTAAGCTAGCAAGAACACCCTACAACACCTGTTCATCTTCAGATCTTGGCTTGCTAGCTCATGTGATCTTCACACCTGTTTCATCCTCAGTTCTTGACTCTTGCTCATTTGATCTCCAATTAATTCATGGATGCTCAGCTCCCAAACAAAACATCTAAGATTTGATCGATCCTGCAAGATTAAAATCTGCACACAGAAGAATATATAAATTTGCATGTAAGCCTCACACCAACATATATATATGAATACAATCTGGCCCTTTAATTTTGTGCAGCCACAAGCAGATGAAACTGCACAGCATGATCTGATCTTTGTTTTGGCAGTCAATTCTGCCCTCACCTAATAAGCACTCATCAGATCATGCTGGCAGCTTCAGCTCCTAATGGTTGCACCTCAACAATCAAGGCTGTGTTTAGATCTAAAGTTTGGATCCAAACTTCAGTCCTTTTCCATTACATCAACCTGTCATACACACACAACTTTTCAGTCACATCATCTCTAATTTCAACCAAAATCCAAACTTTGTACTGAACTAAACACAGCCAAAATTCACACACACACACACACACACGAGAGAGAGAGAGAGAGAGAGAGAG

Coding Potentia
Explanation CPC Score
noncoding -1.14446
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa07LNT0368200.1 7 4166486 T C
Osa07LNT0368200.1 7 4165960 T C
Osa07LNT0368200.1 7 4166366 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0368200.1 osa-miR5818 Cleavage 5.0 16.44 1 21
Osa07LNT0368200.1 osa-miR2873a Translation 3.5 17.95 1 24
Osa07LNT0368200.1 osa-miR812o-3p Cleavage 4.0 13.966 1 24
Osa07LNT0368200.1 osa-miR5148a Translation 3.5 14.984 1 24
Osa07LNT0368200.1 osa-miR5148b Translation 3.5 14.984 1 24
Osa07LNT0368200.1 osa-miR5148c Translation 3.5 14.984 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0368200.1 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0368200.1 7 qSNC-7 Resistance or Tolerance Salinity tolerance C1057 R2401
Osa07LNT0368200.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0368200.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0368200.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0368200.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa07LNT0368200.1 osa-MIR167d 100.0 110 1 110 3.47e-53 204
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus