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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0368300.1

GACATGAAAATGCTCATTAGATAAAACAGTATCAAACTACTGGTTAGCATGGACAATTAAGAAACACGATAATTCCATAGGAGATCTACTCAGCAAACAGTAGTTTGAACAAGCAATACTTCGAAAATGCTGCTATTCTCTAGAGGCTGCCTACAGTGCAGGGGTACATTGTTCAGTTTCTACATTTCTGCAAAAATCAATCAAGTGTGCTCCTGAAAGAGTCTTCGCACCTGTGTACAGCATGAATAGGGACAAATTCTCGAGTTTATCGTCATACTGCAAGAGAAATTTAAGTAATGTATCTTCCTTGCTGCTCCTGAAGGAGACGAGCCGATGATTTAGCGTCCAAATACAGAGCACTGACTTCCTCAAGATCGGCCTTGCTGATCTTCTCTCTCCCATTAGCCTTTGCAACTACACTGGCGGGTGATAGCAACTGAATAGCATGCCTCAAAGATGTCTGTTGTCCAATCTCTCCTAAAAATGCGAGACTTTCTTCATCAATGTCAATCTCTTCCACCTGCGCTCTAATAGCAAGTATCTGGATCATCTCAGTGGGACCATATGTTTCTGTTCGAATAATCACCAATCTGTCTAGAAGATCAACTGGTATACCATGTGGACTTGTCATATCAGTTCCTCTTACGTTACATATTCCTCTGTTCGTAGCAAGTATCACAATTGGTGATAATGGGCTCTCCAAAGCACGATTAAGATAAGAGAAGCATTCAATGTCTAACATGTGGACCTGCGATTAAAGTTCCTCACAAGTAACTAAATCAAACCACATCAAGATTTATACCATATAGTAGAGAAATAGCATGGCAGTATGGCACTGCCCCACAAGGACAACCCACTGTATGTTTGACAACAGACAAACACACCCTCATTTGTATTTATACCTTCTGACTCCAAAATGAGCCACTGAGAAAATTTCCAATCATAATTCGTAAGGATGAAATAATAAGATACCTCGTCAATGAACAGAACACCAGGTACAAGCTCAGCAATTCCTTCATCAATATATCTGTTAACCACCTTATTGATTTCTTGTCGTAGCTTCTCAGTGATTTCAGTTTTCCGTGGCTTCATCATCTGTCCCATAAGGGACAAAATATCTTGGCCTCCTTGTGGTTGAGCATTTGCAGCATCAAGGTCATGAAGCGTAACATCCTGCACTATTTCCTTCTTCTTATGGACCTCCCCTTTGGGGATTGGAACATACTCCTCAGCTTCAAGATCGTATTCTGTAGCAAAAGCATCACATCTACCAACTCTTTTGACCGCACCACTATTAGCTTCAATGTATATAACATCACCCACTGACACCTTTTCCTTTATTAAAGCATCATAAATTGTAGGATCTAGCTTCAGTTGCTTAGTCCCTTTTACAGTCTTCAGACCTATGATTACATGGCTAATGCTTTTTCCATATCCACCTGTTGTACTCTCAGCCTCTTCTGGGGAAAGTTCAGTAACCTCTCCTTCGTAGACCTCTTTATTTTCTTTTATACGCAAACCTATAGCTCTACGGAAATTCTCCATTAGCACCTCAGTTTTCTTGACCTCTGAGGAATACACTTCTGATCCTACCATAGGACAGAAAGGGACCTTACTACCGAGCTCCTGGGAGATGCCGAGAGCGAGAGCCGTCTTGCCGGTGGCGGGCGGGCCGGCGAGAAGCAGCGCGCGCCCGGCCATCTTCTTCTGGCGAATCATGTCGACCACCAGCCCGGCAGCCTCCCTCGCCGCCCCCTGCCCCACGAACCCCGCCGCCAACCCTATCGCCGCCCCATTCGCGTCGAGGCCGAGGCCCTTTATGTGGGTGTGCGTCGCGATCCTCTGCTTCTTCGTCGTCGACTGCACCTCCTCGATCCTCATCGCCGCCGCCGCCGCCGCCGCCGCTTCCTGTCTCTCCGCCTCCCTCCCTCTCCCCCACCGCAACGACGGTGGCCGGCCGGTGGCGCAGCGACGCACGTGCGGAGCTACGAGCGAGCGGCGGCGCGGCGGCGACCTGGGCGGCGGCTGGTGAGCTGCGACTGCGAGCGAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.191637
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0368300.1 osa-miR5791 Translation 4.5 21.719 1 21
Osa07LNT0368300.1 osa-miR396c-3p Cleavage 3.5 18.969 1 21
Osa07LNT0368300.1 osa-miR396c-3p Translation 5.0 8.037 1 21
Osa07LNT0368300.1 osa-miR399a Cleavage 5.0 11.087 1 21
Osa07LNT0368300.1 osa-miR399b Cleavage 5.0 11.087 1 21
Osa07LNT0368300.1 osa-miR399c Cleavage 5.0 11.087 1 21
Osa07LNT0368300.1 osa-miR164e Cleavage 5.0 19.682 1 21
Osa07LNT0368300.1 osa-miR171c-5p Cleavage 4.5 6.067 1 21
Osa07LNT0368300.1 osa-miR171e-5p Translation 4.5 17.962 1 21
Osa07LNT0368300.1 osa-miR426 Cleavage 5.0 11.854 1 21
Osa07LNT0368300.1 osa-miR1879 Cleavage 5.0 11.328 1 24
Osa07LNT0368300.1 osa-miR1846e Cleavage 5.0 20.625 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0368300.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0368300.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0368300.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0368300.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0368300.1 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0368300.1 7 qSNC-7 Resistance or Tolerance Salinity tolerance C1057 R2401
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus